Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KUH03_RS01980 Genome accession   NZ_CP079104
Coordinates   259298..259459 (-) Length   53 a.a.
NCBI ID   WP_257091334.1    Uniprot ID   -
Organism   Sphingobacterium sp. E70     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 254298..264459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUH03_RS01945 (KUH03_01840) - 254600..255475 (-) 876 WP_257091327.1 right-handed parallel beta-helix repeat-containing protein -
  KUH03_RS01950 (KUH03_01845) - 255379..256200 (-) 822 WP_257091328.1 hypothetical protein -
  KUH03_RS01955 (KUH03_01850) - 256271..256456 (-) 186 WP_257091329.1 hypothetical protein -
  KUH03_RS01960 (KUH03_01855) - 256665..257174 (-) 510 Protein_402 TolC family protein -
  KUH03_RS01965 (KUH03_01860) - 257334..257744 (-) 411 WP_257091331.1 TolC family protein -
  KUH03_RS01970 (KUH03_01865) - 257968..259011 (-) 1044 WP_257091332.1 HlyD family efflux transporter periplasmic adaptor subunit -
  KUH03_RS01975 (KUH03_01870) - 259113..259292 (-) 180 WP_257091333.1 hypothetical protein -
  KUH03_RS01980 (KUH03_01875) rcrQ 259298..259459 (-) 162 WP_257091334.1 hypothetical protein Regulator
  KUH03_RS01985 (KUH03_01880) - 259492..260187 (-) 696 WP_257091335.1 ATP-binding cassette domain-containing protein -
  KUH03_RS01990 (KUH03_01885) - 260514..260957 (-) 444 WP_257091336.1 ABC transporter transmembrane domain-containing protein -
  KUH03_RS01995 (KUH03_01890) - 261092..261511 (-) 420 WP_257091337.1 cysteine peptidase family C39 domain-containing protein -
  KUH03_RS02000 (KUH03_01895) - 261546..261944 (-) 399 WP_257091338.1 hypothetical protein -
  KUH03_RS02005 (KUH03_01900) - 261983..262408 (-) 426 WP_257091339.1 glycosyltransferase family A protein -
  KUH03_RS02010 (KUH03_01905) - 262387..263619 (-) 1233 WP_257091340.1 glycosyltransferase -
  KUH03_RS02015 (KUH03_01910) - 263836..264150 (-) 315 WP_257091341.1 hypothetical protein -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6160.06 Da        Isoelectric Point: 8.7796

>NTDB_id=587783 KUH03_RS01980 WP_257091334.1 259298..259459(-) (rcrQ) [Sphingobacterium sp. E70]
MAHRLSTIRKADQIVVMKDGQVIEIGNHETLMERRGRYHQLVDSQSEVRVLTN

Nucleotide


Download         Length: 162 bp        

>NTDB_id=587783 KUH03_RS01980 WP_257091334.1 259298..259459(-) (rcrQ) [Sphingobacterium sp. E70]
GTGGCGCATAGATTGAGCACGATACGCAAGGCGGATCAAATAGTTGTTATGAAGGATGGCCAGGTTATCGAGATAGGAAA
TCATGAGACACTCATGGAACGGAGAGGGCGCTATCATCAATTGGTCGACAGCCAATCTGAAGTAAGGGTATTAACAAATT
GA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.778

84.906

0.491
  comA Streptococcus gordonii str. Challis substr. CH1

45.455

83.019

0.377