Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KVY05_RS01760 Genome accession   NZ_CP079099
Coordinates   329438..329875 (-) Length   145 a.a.
NCBI ID   WP_218791482.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBY-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324438..334875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVY05_RS01735 (KVY05_01735) - 325457..326593 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  KVY05_RS01740 (KVY05_01740) - 326608..327042 (+) 435 WP_059366555.1 RDD family protein -
  KVY05_RS01745 (KVY05_01745) - 327160..327438 (+) 279 WP_263612330.1 YckD family protein -
  KVY05_RS01750 (KVY05_01750) - 327542..328978 (+) 1437 WP_072588782.1 glycoside hydrolase family 1 protein -
  KVY05_RS01755 (KVY05_01755) nin/comJ 329019..329417 (-) 399 WP_218791481.1 competence protein ComJ Regulator
  KVY05_RS01760 (KVY05_01760) nucA/comI 329438..329875 (-) 438 WP_218791482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KVY05_RS01765 (KVY05_01765) hxlB 330232..330789 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  KVY05_RS01770 (KVY05_01770) hxlA 330786..331421 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  KVY05_RS01775 (KVY05_01775) - 331653..332015 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.33 Da        Isoelectric Point: 8.4850

>NTDB_id=587713 KVY05_RS01760 WP_218791482.1 329438..329875(-) (nucA/comI) [Bacillus velezensis strain LBY-1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQAVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=587713 KVY05_RS01760 WP_218791482.1 329438..329875(-) (nucA/comI) [Bacillus velezensis strain LBY-1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGGCCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634