Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KW114_RS12195 Genome accession   NZ_CP079097
Coordinates   2627647..2628690 (+) Length   347 a.a.
NCBI ID   WP_218797208.1    Uniprot ID   -
Organism   Methylococcus capsulatus strain KN2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2622647..2633690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW114_RS12175 (KW114_12175) tldD 2622982..2624427 (+) 1446 WP_218797205.1 metalloprotease TldD -
  KW114_RS12180 (KW114_12180) pmbA 2624420..2625754 (+) 1335 WP_218797206.1 metalloprotease PmbA -
  KW114_RS12185 (KW114_12185) - 2626582..2627061 (+) 480 WP_010959745.1 CinA family protein -
  KW114_RS12190 (KW114_12190) thpR 2627042..2627614 (+) 573 WP_218797207.1 RNA 2',3'-cyclic phosphodiesterase -
  KW114_RS12195 (KW114_12195) recA 2627647..2628690 (+) 1044 WP_218797208.1 recombinase RecA Machinery gene
  KW114_RS12200 (KW114_12200) - 2628741..2629157 (+) 417 WP_010959748.1 regulatory protein RecX -
  KW114_RS12205 (KW114_12205) alaS 2629177..2631780 (+) 2604 WP_218797209.1 alanine--tRNA ligase -
  KW114_RS12210 (KW114_12210) - 2631815..2633044 (+) 1230 WP_218797210.1 aspartate kinase -
  KW114_RS12215 (KW114_12215) csrA 2633195..2633389 (+) 195 WP_010959751.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37100.33 Da        Isoelectric Point: 5.3109

>NTDB_id=587679 KW114_RS12195 WP_218797208.1 2627647..2628690(+) (recA) [Methylococcus capsulatus strain KN2]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVIPTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGKDNVRIYLKEHPEVAAAIE
AAVREKALAGFQHAPSAERAALEESGF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=587679 KW114_RS12195 WP_218797208.1 2627647..2628690(+) (recA) [Methylococcus capsulatus strain KN2]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTTTCCCAGATCGAGAAACAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGATGTCGCGGCGGTCCGGGACATCGACGTGATTCCCACCGGCTCCCTGGCGCTGGACATCGCGCTGGGCTGCG
GCGGTTTGCCGCGTGGTCGCATCGTCGAGATTTACGGGCCGGAGTCCTCGGGCAAGACGACGCTGACTCTGGAGGTCATC
GCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCTTTCGTGGATGCCGAGCATGCCCTGGACCCGGTCTATGCCGAGAAGAT
CGGAGTGAACCTCGACGATCTGCTGGTGTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCGGACATGCTGGTGC
GTTCCGGCGGCGTGGACGTCGTGGTGATCGACTCGGTGGCGGCGTTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCGCACATGGGTCTGCAGGCCAGACTGATGTCGCAGGCCTTGCGCAAGCTGACCGCCAACATCAAGCGATCCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAGACCACCACCGGCGGTAACG
CGCTCAAGTTCTATGCCTCGGTGCGGCTGGACATCCGCCGTTCGGGGGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGCACCGCCGACTTCGAGATTCTCTATGGCGAAGG
CATCTCGCGCGAGGGCGAACTGATCGACCTCGGCGTGAACCACGACATCGTACAGAAGTCCGGTTCCTGGTACAGCTATG
GCGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCGGAGGTCGCGGCTGCCATCGAG
GCGGCCGTTCGCGAGAAGGCGTTGGCCGGGTTCCAGCACGCACCGTCCGCCGAGCGTGCAGCGCTGGAGGAGAGCGGGTT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.911

100

0.729
  recA Acinetobacter baylyi ADP1

71.221

99.135

0.706
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Neisseria gonorrhoeae MS11

72.892

95.677

0.697
  recA Neisseria gonorrhoeae MS11

72.892

95.677

0.697
  recA Neisseria gonorrhoeae strain FA1090

72.892

95.677

0.697
  recA Acinetobacter baumannii D1279779

72.644

94.813

0.689
  recA Ralstonia pseudosolanacearum GMI1000

75.806

89.337

0.677
  recA Glaesserella parasuis strain SC1401

71.739

92.795

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.066

95.965

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

67.081

92.795

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

93.66

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

60.819

98.559

0.599
  recA Helicobacter pylori strain NCTC11637

63.497

93.948

0.597
  recA Helicobacter pylori 26695

63.19

93.948

0.594
  recA Streptococcus pneumoniae R6

62.577

93.948

0.588
  recA Streptococcus pneumoniae Rx1

62.577

93.948

0.588
  recA Streptococcus pneumoniae D39

62.577

93.948

0.588
  recA Streptococcus pneumoniae TIGR4

62.577

93.948

0.588
  recA Streptococcus pyogenes NZ131

62.195

94.524

0.588
  recA Streptococcus mitis SK321

62.654

93.372

0.585
  recA Streptococcus mitis NCTC 12261

62.037

93.372

0.579
  recA Streptococcus mutans UA159

61.656

93.948

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.819

95.389

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.494

93.372

0.565