Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KW115_RS16760 Genome accession   NZ_CP079095
Coordinates   3471487..3472830 (+) Length   447 a.a.
NCBI ID   WP_218809134.1    Uniprot ID   -
Organism   Methylococcus sp. Mc7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3466487..3477830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW115_RS16735 (KW115_16735) modC 3467144..3468214 (+) 1071 WP_218806775.1 molybdenum ABC transporter ATP-binding protein -
  KW115_RS16740 (KW115_16740) - 3468344..3468772 (+) 429 WP_218806776.1 molybdopterin-binding protein -
  KW115_RS16745 (KW115_16745) - 3468871..3469674 (+) 804 WP_218806777.1 sulfite exporter TauE/SafE family protein -
  KW115_RS16750 (KW115_16750) htpX 3469725..3470609 (-) 885 WP_218806778.1 protease HtpX -
  KW115_RS16755 (KW115_16755) - 3470717..3471460 (+) 744 WP_218806779.1 class I SAM-dependent methyltransferase -
  KW115_RS16760 (KW115_16760) radA 3471487..3472830 (+) 1344 WP_218809134.1 DNA repair protein RadA Machinery gene
  KW115_RS16765 (KW115_16765) - 3473079..3475286 (+) 2208 WP_218806780.1 FG-GAP repeat protein -
  KW115_RS16770 (KW115_16770) - 3475584..3476531 (+) 948 WP_218809135.1 integrase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 47375.21 Da        Isoelectric Point: 6.7634

>NTDB_id=587642 KW115_RS16760 WP_218809134.1 3471487..3472830(+) (radA) [Methylococcus sp. Mc7]
MVYRCTECGQSQPKWSGQCGGCGLWNTLAEEVEAPAPSRRQVGYAGVAEASVPVSLAEVSLEELSRVGSGLAELDRVLGG
GVVPGSAILLGGDPGIGKSTLLLQTLAYLGKSARTLYVTGEESLSQVSLRAHRLGLNGGDIQALAETSLERILGAASQHK
PEVLVVDSIQTVYSESLQSAPGSVGQVRECAAQLVRYAKQSSTTVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGDASSR
YRVVRSFKNRFGAVNELGVFAMTETGLKEVRNPSAIFLSRGDEDMPGSIVTVTREGSRPLLVEVQALVDESHLQAPRRLV
VGMEMNRLAMLLAVLHRHGGVPVAAQDVFVNLVGGVRLTETAGDLAVACAVVSSFRDRPVPGDWVVFGELGLNGEIRPVP
NGEERLREAAKHGFKHALVPAKNAPKQGVPGVSIIPAKNLREAINAL

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=587642 KW115_RS16760 WP_218809134.1 3471487..3472830(+) (radA) [Methylococcus sp. Mc7]
ATCGTCTACCGCTGCACCGAGTGCGGCCAGAGCCAGCCCAAATGGTCCGGTCAGTGCGGCGGCTGCGGTTTGTGGAACAC
TCTGGCCGAGGAGGTCGAAGCGCCCGCGCCCAGCCGGCGCCAAGTCGGCTACGCCGGTGTCGCCGAGGCGAGCGTCCCGG
TCTCCCTGGCCGAGGTGTCCCTGGAGGAACTGTCGCGCGTCGGCAGCGGCCTGGCGGAACTCGACCGGGTGCTCGGCGGC
GGCGTGGTGCCGGGTTCGGCGATCCTGCTCGGCGGCGATCCCGGTATCGGCAAATCGACCCTGCTGCTGCAGACGCTGGC
TTATCTGGGCAAGAGCGCGCGCACGCTGTACGTGACCGGCGAGGAATCGCTCAGCCAGGTCAGCCTGCGGGCGCATCGGC
TGGGCCTCAACGGCGGGGATATCCAGGCGCTGGCCGAAACCTCGCTGGAACGCATCCTCGGCGCGGCAAGCCAGCACAAG
CCCGAGGTGCTGGTGGTCGATTCGATCCAGACCGTATACAGCGAGTCCCTGCAATCGGCGCCCGGTTCGGTGGGGCAGGT
GCGGGAATGCGCGGCGCAACTGGTGCGCTACGCCAAGCAGAGTTCGACCACCGTGTTCCTGGTCGGCCACGTCACCAAGG
AGGGCGCGCTGGCCGGTCCCCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAGGGCGATGCGTCCAGCCGC
TACCGGGTGGTGCGCTCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTTCGCCATGACCGAGACCGGTCT
CAAGGAAGTCCGCAACCCTTCGGCCATCTTCCTGTCGCGGGGCGACGAGGACATGCCGGGCAGCATCGTCACCGTGACCC
GCGAGGGCAGCCGGCCCTTGCTGGTGGAAGTCCAGGCCCTGGTCGACGAATCCCATCTCCAGGCCCCGCGGCGGCTGGTG
GTGGGCATGGAGATGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGGCGGGGTTCCCGTCGCGGCGCAGGA
CGTATTCGTCAACCTGGTCGGCGGCGTCCGTCTCACCGAGACCGCCGGCGATTTGGCCGTGGCCTGCGCCGTGGTCTCCA
GTTTCCGCGACCGCCCCGTGCCCGGCGACTGGGTCGTCTTCGGCGAACTCGGCCTCAACGGCGAGATCCGTCCCGTGCCC
AACGGTGAAGAGAGGCTGCGTGAAGCCGCCAAGCACGGTTTCAAACACGCCCTGGTGCCGGCCAAGAACGCGCCGAAGCA
GGGTGTGCCCGGCGTTTCCATCATCCCCGCGAAAAATTTGCGGGAAGCGATCAACGCGCTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-215)

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(3-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.879

99.776

0.488
  radA Streptococcus pneumoniae Rx1

44.619

99.776

0.445
  radA Streptococcus pneumoniae D39

44.619

99.776

0.445
  radA Streptococcus pneumoniae R6

44.619

99.776

0.445
  radA Streptococcus pneumoniae TIGR4

44.619

99.776

0.445
  radA Streptococcus mitis SK321

46.919

94.407

0.443
  radA Streptococcus mitis NCTC 12261

46.919

94.407

0.443