Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SA27298_RS00210 Genome accession   NZ_AP018548
Coordinates   27904..28677 (+) Length   257 a.a.
NCBI ID   WP_003032065.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22904..33677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS00190 (SA27298_0039) mreD 23650..24150 (+) 501 WP_003032067.1 rod shape-determining protein MreD -
  SA27298_RS00195 (SA27298_0040) - 24260..25486 (+) 1227 WP_003032078.1 CHAP domain-containing protein -
  SA27298_RS00200 (SA27298_0041) - 25619..26587 (+) 969 WP_003032055.1 ribose-phosphate diphosphokinase -
  SA27298_RS00205 (SA27298_0042) - 26739..27926 (+) 1188 WP_003032048.1 pyridoxal phosphate-dependent aminotransferase -
  SA27298_RS00210 (SA27298_0043) recO 27904..28677 (+) 774 WP_003032065.1 DNA repair protein RecO Machinery gene
  SA27298_RS00215 (SA27298_0044) plsX 28674..29672 (+) 999 WP_003032056.1 phosphate acyltransferase PlsX -
  SA27298_RS00220 (SA27298_0045) - 29669..29914 (+) 246 WP_003032071.1 acyl carrier protein -
  SA27298_RS00225 (SA27298_0046) purC 30073..30780 (+) 708 WP_003032064.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29909.26 Da        Isoelectric Point: 5.6003

>NTDB_id=58762 SA27298_RS00210 WP_003032065.1 27904..28677(+) (recO) [Streptococcus anginosus strain CCUG 27928]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFAMAYATYVVALADASIQDNEIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRVG
LPFDFSFTYNGVLCPEHYGKDERRSHLDPNIPYLLDQFQAVQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=58762 SA27298_RS00210 WP_003032065.1 27904..28677(+) (recO) [Streptococcus anginosus strain CCUG 27928]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAGCTGGTCAAAATTTT
CACAGAGCAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCAGTTATCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTGCAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGACGCTAGTATTCAGGATAATGA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGTGTTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGG
CTACCGTTTGATTTTTCCTTTACTTATAATGGCGTTTTATGTCCGGAACATTATGGCAAAGATGAGCGACGGAGTCATTT
GGATCCCAACATTCCTTATTTATTAGACCAATTTCAAGCGGTTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747