Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KVH38_RS12275 Genome accession   NZ_CP078509
Coordinates   2615836..2616393 (+) Length   185 a.a.
NCBI ID   WP_049339043.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain S116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2610836..2621393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVH38_RS12250 (KVH38_12250) speA 2610857..2612770 (-) 1914 WP_218650759.1 arginine decarboxylase -
  KVH38_RS12255 (KVH38_12255) - 2612893..2613264 (-) 372 WP_218650760.1 translation initiation factor Sui1 -
  KVH38_RS12260 (KVH38_12260) thiO 2613414..2614520 (-) 1107 WP_218650761.1 glycine oxidase ThiO -
  KVH38_RS12265 (KVH38_12265) - 2614674..2615168 (+) 495 WP_041771646.1 GspH/FimT family pseudopilin -
  KVH38_RS12270 (KVH38_12270) - 2615336..2615827 (+) 492 WP_218650762.1 GspH/FimT family pseudopilin -
  KVH38_RS12275 (KVH38_12275) pilV 2615836..2616393 (+) 558 WP_049339043.1 type IV pilus modification protein PilV Machinery gene
  KVH38_RS12280 (KVH38_12280) - 2616390..2617241 (+) 852 WP_049339024.1 PilW family protein -
  KVH38_RS12285 (KVH38_12285) - 2617238..2617843 (+) 606 WP_108241514.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20197.00 Da        Isoelectric Point: 4.8297

>NTDB_id=587548 KVH38_RS12275 WP_049339043.1 2615836..2616393(+) (pilV) [Stutzerimonas stutzeri strain S116]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPKFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKVEAALPGGAELFDSDTYICRSSKPGSCDGQGSMLEIHMAWQ
VREGACPDPNNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=587548 KVH38_RS12275 WP_049339043.1 2615836..2616393(+) (pilV) [Stutzerimonas stutzeri strain S116]
ATGAAAACCAATAAAGGCTTCAGTCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACCATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTTTTCAACACCTCCCCTCCAAAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGGTGGAAGCAGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCAAGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCCCGACCCGAACAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.727

98.919

0.492