Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   KV188_RS03810 Genome accession   NZ_CP078508
Coordinates   821749..822042 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 816749..827042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV188_RS03780 (KV188_03780) artM 817081..817764 (-) 684 WP_005601946.1 arginine ABC transporter permease ArtM -
  KV188_RS03785 (KV188_03785) artQ 817764..818435 (-) 672 WP_005601949.1 arginine ABC transporter permease ArtQ -
  KV188_RS03790 (KV188_03790) - 818441..819160 (-) 720 WP_005619670.1 transporter substrate-binding domain-containing protein -
  KV188_RS03795 (KV188_03795) artP 819180..819914 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  KV188_RS03800 (KV188_03800) - 820139..820636 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  KV188_RS03805 (KV188_03805) - 820709..821671 (+) 963 WP_005619672.1 calcium/sodium antiporter -
  KV188_RS03810 (KV188_03810) HI0659 821749..822042 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  KV188_RS03815 (KV188_03815) - 822023..822394 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KV188_RS03820 (KV188_03820) - 822588..824339 (+) 1752 WP_039709264.1 protein-disulfide reductase DsbD -
  KV188_RS03825 (KV188_03825) - 824397..824966 (+) 570 WP_005608594.1 elongation factor P hydroxylase -
  KV188_RS03830 (KV188_03830) rsmI 825010..825864 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=587518 KV188_RS03810 WP_005598477.1 821749..822042(-) (HI0659) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=587518 KV188_RS03810 WP_005598477.1 821749..822042(-) (HI0659) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619