Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KW861_RS06065 Genome accession   NZ_CP078505
Coordinates   1297802..1299619 (+) Length   605 a.a.
NCBI ID   WP_005472346.1    Uniprot ID   -
Organism   Enterococcus gallinarum strain fecal_iso1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292802..1304619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW861_RS06045 (KW861_06050) - 1293061..1294776 (+) 1716 WP_005472341.1 ABC transporter ATP-binding protein -
  KW861_RS06050 (KW861_06055) spxA 1295454..1295852 (+) 399 WP_003127030.1 transcriptional regulator SpxA -
  KW861_RS06055 (KW861_06060) - 1296007..1296657 (+) 651 WP_003127031.1 adaptor protein MecA -
  KW861_RS06060 (KW861_06065) - 1296740..1297735 (+) 996 WP_103299931.1 competence protein CoiA -
  KW861_RS06065 (KW861_06070) pepF 1297802..1299619 (+) 1818 WP_005472346.1 oligoendopeptidase F Regulator
  KW861_RS06070 (KW861_06075) - 1299806..1300069 (+) 264 WP_103299932.1 hypothetical protein -
  KW861_RS06075 (KW861_06080) - 1300174..1300830 (-) 657 WP_103299933.1 DsbA family protein -
  KW861_RS06080 (KW861_06085) - 1300919..1301512 (-) 594 WP_103299934.1 CYTH domain-containing protein -
  KW861_RS06085 (KW861_06090) - 1301708..1302361 (+) 654 WP_021151082.1 GTP pyrophosphokinase family protein -
  KW861_RS06090 (KW861_06095) - 1302367..1303164 (+) 798 WP_029486937.1 NAD kinase -
  KW861_RS06095 (KW861_06100) - 1303170..1304069 (+) 900 WP_103299935.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68792.28 Da        Isoelectric Point: 4.6378

>NTDB_id=587490 KW861_RS06065 WP_005472346.1 1297802..1299619(+) (pepF) [Enterococcus gallinarum strain fecal_iso1]
MSETKQLPDRADLPEALTWDLTKIYADDGAFEEAFQEIVAELKQADDFKGTLSQGPAAFKEALEYVLAISRKLEKLYVYS
HLKNDQDTANTTYQGLYAKASNLVAQVSEAIAWFDPELLSMDDATIWGYFDQEPELAIYRHLIEKTVNNRPHVLPAEQEA
LLAGAGEIFGASGNIFSVLNNADLEFPIVEDENGEKVQLSHGVYGQLMENTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARHYESARQAALSANHIPESVYDTLVAVVNEHLPLLHRYMELRKRLLAVDTLHMYDVYTPILGEAPIRYS
YEEAVAKAKDALKPLGEEYLAVVNEAFENRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYVYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSDSYGELNAKYYGPSVEKDPEISLEWSRIPHFYYNYYVYQYATGFSAASALAKKILTGEPDALTKYLTYLKAG
NSDYPIEVMKKAGVDMTKADYIKDAMKVFEQRLDELEALVKELEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=587490 KW861_RS06065 WP_005472346.1 1297802..1299619(+) (pepF) [Enterococcus gallinarum strain fecal_iso1]
ATGTCAGAAACAAAACAATTACCAGATCGTGCGGATCTACCGGAAGCATTAACATGGGACCTTACAAAGATCTATGCCGA
TGATGGGGCATTTGAAGAAGCGTTCCAAGAGATCGTGGCTGAGTTGAAGCAGGCTGATGATTTCAAAGGGACATTATCAC
AAGGACCAGCAGCTTTCAAGGAAGCATTAGAATATGTGTTAGCGATCTCCCGTAAACTGGAAAAACTCTATGTATACAGT
CATCTGAAAAATGATCAAGATACAGCCAACACAACCTATCAAGGGCTTTATGCAAAAGCCAGCAACCTTGTTGCTCAAGT
AAGTGAAGCGATTGCCTGGTTTGATCCTGAATTGCTTTCAATGGATGATGCAACTATTTGGGGTTATTTCGACCAAGAGC
CGGAATTGGCCATTTACCGCCATCTTATTGAAAAAACAGTCAATAACCGTCCCCATGTTTTGCCGGCTGAACAAGAAGCT
TTACTAGCAGGTGCAGGAGAAATATTCGGCGCTTCTGGAAATATTTTTTCCGTATTAAACAATGCCGATTTAGAATTTCC
GATCGTTGAAGACGAGAATGGAGAGAAAGTTCAATTATCTCATGGTGTTTATGGTCAATTGATGGAAAATACCGACCGTT
CCGTACGGGAAGCTGCCTTTAAAGGGTTGTATGGTGTCTATGAGCAGTTCCGTAATACATTTGCCCAAACATTAAGTACC
AATATCAAAGCCCATAACTTTAAAGCTAAAGCACGCCACTATGAGTCTGCTCGACAAGCTGCATTAAGTGCCAACCACAT
CCCGGAAAGTGTCTATGACACCTTGGTAGCTGTCGTGAATGAACATTTGCCGCTGCTGCATCGTTACATGGAGTTAAGAA
AACGCTTATTGGCTGTTGATACTTTGCATATGTATGATGTCTATACACCAATTCTAGGGGAAGCTCCGATTCGCTATAGC
TATGAAGAAGCTGTCGCAAAAGCCAAAGATGCTTTAAAACCTCTAGGTGAAGAATATTTAGCCGTGGTAAACGAAGCGTT
TGAAAATCGCTGGATCGATGTTGTCGAAAATAAAGGCAAACGCAGTGGCGCCTATTCATCTGGCGCGTACGACACATTAC
CCTATATTTTGATGAACTGGAATGATCGTTTGGATCAATTGTTCACATTGGTGCATGAGATGGGTCACAGTGTCCACAGT
TATTTTACTCGCAACAATCAACCTTATGTTTATGGCGATTATTCTATTTTCTTGGCGGAAATTGCTTCAACAACTAACGA
GAACATCTTGACAGAATACATGTTGCAAACCGAAACTGATCCTCGCGTAAAAGCCTATGTCTTGAATCATTTTCTGGATG
GATTTAAAGGAACGATTTTCCGTCAGACACAATTTGCTGAGTTTGAACACTTTATGCACGTAGAAGATGCCAAAGGAACG
CCATTGACTAGTGAATTTTTGAGTGACAGCTATGGTGAGCTGAATGCTAAATACTACGGTCCTTCTGTAGAAAAAGATCC
TGAGATCAGTCTAGAGTGGTCACGTATCCCGCATTTTTACTACAATTACTATGTCTATCAATACGCAACAGGCTTTTCGG
CAGCTTCTGCACTAGCTAAGAAAATTTTAACAGGAGAGCCTGATGCCTTAACGAAATATTTGACTTATCTAAAAGCAGGC
AACAGCGATTATCCAATTGAAGTGATGAAAAAAGCTGGAGTTGATATGACTAAAGCAGATTATATCAAAGACGCGATGAA
AGTCTTTGAACAACGGTTGGATGAATTGGAAGCATTAGTCAAGGAATTAGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.397

98.182

0.554