Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K751_RS02330 Genome accession   NC_021218
Coordinates   481026..481436 (+) Length   136 a.a.
NCBI ID   WP_015643074.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 476026..486436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS02295 (K751_05805) - 476199..477137 (-) 939 WP_015643079.1 tetraacyldisaccharide 4'-kinase -
  K751_RS02300 (K751_05800) - 477134..477916 (-) 783 WP_015643078.1 NAD+ synthase -
  K751_RS02310 (K751_09255) ilvC 478165..479157 (+) 993 WP_015643077.1 ketol-acid reductoisomerase -
  K751_RS02315 (K751_05790) minD 479181..479987 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  K751_RS02320 (K751_05785) minE 479984..480217 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  K751_RS02325 (K751_05780) dprA 480229..481029 (+) 801 WP_015643075.1 DNA-processing protein DprA Machinery gene
  K751_RS02330 (K751_05775) dprB 481026..481436 (+) 411 WP_015643074.1 Holliday junction resolvase RuvX Machinery gene
  K751_RS02335 (K751_05770) - 481433..481693 (+) 261 WP_015643073.1 tetratricopeptide repeat protein -
  K751_RS02340 (K751_05765) - 481883..482221 (+) 339 WP_015643072.1 hypothetical protein -
  K751_RS02345 (K751_05760) - 482205..482765 (+) 561 WP_015643071.1 hypothetical protein -
  K751_RS02350 (K751_05755) - 482776..483114 (+) 339 WP_015643070.1 lysozyme-like protein -
  K751_RS08540 - 483131..483277 (+) 147 WP_236609095.1 hypothetical protein -
  K751_RS02355 (K751_09260) - 483297..483458 (+) 162 WP_014536434.1 lysozyme -
  K751_RS02360 (K751_05740) - 483789..484175 (+) 387 WP_031249983.1 DUF1294 domain-containing protein -
  K751_RS02365 (K751_05735) - 484175..484960 (+) 786 WP_015643066.1 hypothetical protein -
  K751_RS02370 (K751_05730) - 484950..486074 (+) 1125 WP_015643065.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15541.18 Da        Isoelectric Point: 9.4515

>NTDB_id=58743 K751_RS02330 WP_015643074.1 481026..481436(+) (dprB) [Helicobacter pylori UM066]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKLAI

Nucleotide


Download         Length: 411 bp        

>NTDB_id=58743 K751_RS02330 WP_015643074.1 481026..481436(+) (dprB) [Helicobacter pylori UM066]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATTAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGC
TTGCGATTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

97.059

0.934

Multiple sequence alignment