Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   K751_RS01495 Genome accession   NC_021218
Coordinates   302312..303514 (+) Length   400 a.a.
NCBI ID   WP_015643444.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297312..308514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS08530 (K751_08190) - 299382..299522 (+) 141 WP_015643441.1 hypothetical protein -
  K751_RS01485 (K751_08195) - 299515..300654 (+) 1140 WP_015643442.1 VirB8/TrbF family protein -
  K751_RS01490 (K751_08200) - 300651..302315 (+) 1665 WP_015643443.1 TrbG/VirB9 family P-type conjugative transfer protein -
  K751_RS01495 (K751_08205) comB10 302312..303514 (+) 1203 WP_015643444.1 DNA type IV secretion system protein ComB10 Machinery gene
  K751_RS01500 (K751_09220) - 303498..305760 (+) 2263 Protein_290 collagen-like protein -
  K751_RS01505 (K751_08220) - 305773..306750 (+) 978 WP_015643445.1 hypothetical protein -
  K751_RS01510 (K751_08225) - 306768..307040 (+) 273 WP_015643446.1 hypothetical protein -
  K751_RS01515 (K751_08230) - 307045..307989 (+) 945 WP_015643447.1 CpaF/VirB11 family protein -
  K751_RS01520 (K751_08235) - 307986..308504 (+) 519 WP_015643448.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44707.35 Da        Isoelectric Point: 9.8266

>NTDB_id=58740 K751_RS01495 WP_015643444.1 302312..303514(+) (comB10) [Helicobacter pylori UM066]
MSKSLLKKIGLVIGGFGALMTLGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPAAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLDTRLKPLEPTKPATKLETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYDNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQFTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=58740 K751_RS01495 WP_015643444.1 302312..303514(+) (comB10) [Helicobacter pylori UM066]
ATGAGTAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGACATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTGCAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAGACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCTTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGATATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACGATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATTACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAATTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.821

97.5

0.515

Multiple sequence alignment