Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KVY09_RS00160 Genome accession   NZ_CP078159
Coordinates   38191..39819 (-) Length   542 a.a.
NCBI ID   WP_151370784.1    Uniprot ID   A0A2K0AX17
Organism   Staphylococcus haemolyticus strain NY5     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33191..44819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVY09_RS00135 (KVY09_00135) - 33969..34184 (-) 216 WP_053031251.1 hypothetical protein -
  KVY09_RS00140 (KVY09_00140) - 34199..34702 (-) 504 WP_053031250.1 DUF1643 domain-containing protein -
  KVY09_RS00145 (KVY09_00145) - 34720..35031 (-) 312 WP_218449283.1 DUF960 family protein -
  KVY09_RS00150 (KVY09_00150) - 35118..35468 (-) 351 WP_044466487.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KVY09_RS00155 (KVY09_00155) putP 36002..37540 (-) 1539 WP_044466488.1 sodium/proline symporter PutP -
  KVY09_RS00160 (KVY09_00160) ccrB 38191..39819 (-) 1629 WP_151370784.1 cassette chromosome recombinase CcrB Machinery gene
  KVY09_RS00165 (KVY09_00165) ccrA 39840..41189 (-) 1350 WP_218449285.1 cassette chromosome recombinase CcrA Machinery gene
  KVY09_RS00170 (KVY09_00170) - 41381..41656 (-) 276 WP_044466491.1 hypothetical protein -
  KVY09_RS00175 (KVY09_00175) cch1 41725..43512 (-) 1788 WP_151370785.1 cassette chromosome replicative helicase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62472.19 Da        Isoelectric Point: 9.4620

>NTDB_id=587398 KVY09_RS00160 WP_151370784.1 38191..39819(-) (ccrB) [Staphylococcus haemolyticus strain NY5]
MQQLKQKHVGIYVRVSTEIQNTEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKN
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIIKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDHIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=587398 KVY09_RS00160 WP_151370784.1 38191..39819(-) (ccrB) [Staphylococcus haemolyticus strain NY5]
ATGCAACAACTCAAACAAAAACATGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAATACTGAAGGCTATAGTAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCTGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTATTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAACGAAATAACATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGAATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCGTCAAATA
TATCTTTGAGTCATATGCTAAAGGCCACGGATATCGTAAGATGGCTAATGCACTTAATCATAAAGGTTATGTGACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAACCCCTTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTTAGTCAAAAACCTCAAGTTCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAAAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAGAAATACGTTATGGATCAAATACTTGAAATTATCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATTGCCTATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
ACATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTCATTGACCATATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-281)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0AX17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.317

100

0.843