Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   K751_RS00985 Genome accession   NC_021218
Coordinates   210665..210946 (-) Length   93 a.a.
NCBI ID   WP_015643367.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 205665..215946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS00970 (K751_07670) - 206375..207805 (-) 1431 WP_162972184.1 COG3014 family protein -
  K751_RS00975 (K751_07675) comB4 208036..210399 (-) 2364 WP_015643365.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  K751_RS00980 (K751_07680) comB3 210402..210665 (-) 264 WP_015643366.1 hypothetical protein Machinery gene
  K751_RS00985 (K751_07685) comB2 210665..210946 (-) 282 WP_015643367.1 TrbC/VirB2 family protein Machinery gene
  K751_RS00990 (K751_07690) - 211091..211918 (-) 828 WP_015643368.1 DUF5718 family protein -
  K751_RS00995 (K751_07695) - 212009..213061 (-) 1053 WP_015643369.1 MnmA/TRMU family protein -
  K751_RS01000 (K751_09175) dnaG 213058..214737 (-) 1680 WP_021299752.1 DNA primase -
  K751_RS01005 (K751_07710) groES 215012..215368 (+) 357 WP_015643372.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10512.79 Da        Isoelectric Point: 9.1450

>NTDB_id=58737 K751_RS00985 WP_015643367.1 210665..210946(-) (comB2) [Helicobacter pylori UM066]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFSALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=58737 K751_RS00985 WP_015643367.1 210665..210946(-) (comB2) [Helicobacter pylori UM066]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAGCGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGAATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment