Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   K751_RS00865 Genome accession   NC_021218
Coordinates   182766..184079 (-) Length   437 a.a.
NCBI ID   WP_015643346.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177766..189079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS00835 (K751_07525) nadC 178229..179050 (-) 822 WP_015643342.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K751_RS00840 (K751_07530) nadA 179050..180060 (-) 1011 WP_015643343.1 quinolinate synthase NadA -
  K751_RS00845 (K751_07535) - 180050..180853 (-) 804 WP_015643344.1 phosphatidylserine decarboxylase -
  K751_RS00850 (K751_07540) - 180850..181353 (-) 504 WP_000953083.1 hypothetical protein -
  K751_RS00855 (K751_07545) - 181366..181860 (-) 495 WP_015643345.1 hypothetical protein -
  K751_RS00860 (K751_07550) mqnP 181853..182737 (-) 885 WP_000913981.1 menaquinone biosynthesis prenyltransferase MqnP -
  K751_RS00865 (K751_07555) comEC/comE3 182766..184079 (-) 1314 WP_015643346.1 ComEC/Rec2 family competence protein Machinery gene
  K751_RS00870 (K751_07560) - 184076..185542 (-) 1467 WP_015643347.1 replicative DNA helicase -
  K751_RS00875 (K751_07565) - 185553..186947 (-) 1395 WP_015643348.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  K751_RS00880 (K751_07570) crdS 186950..188152 (-) 1203 WP_080132383.1 copper-sensing histidine kinase CrdS -
  K751_RS00885 (K751_07575) crdR 188118..188759 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -
  K751_RS08065 - 188845..189069 (-) 225 Protein_171 restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50182.09 Da        Isoelectric Point: 9.8515

>NTDB_id=58733 K751_RS00865 WP_015643346.1 182766..184079(-) (comEC/comE3) [Helicobacter pylori UM066]
MKDKTFQGAFELLTTPKEYLLCGVVLSLLLAFNLYLEYLNYQKLDFSKPISLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDMGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=58733 K751_RS00865 WP_015643346.1 182766..184079(-) (comEC/comE3) [Helicobacter pylori UM066]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTATAAGCCTGAACG
CTCAAATTTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCACGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATGGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACGCTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTCTGCATGCTGTAGGTTTGGGGTCTTTGTTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment