Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   M1M81_RS09625 Genome accession   NZ_CP096591
Coordinates   2030257..2032035 (-) Length   592 a.a.
NCBI ID   WP_032873435.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain A15.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025257..2037035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M81_RS09595 (M1M81_09595) - 2025368..2025904 (-) 537 WP_007611945.1 DUF420 domain-containing protein -
  M1M81_RS09600 (M1M81_09600) - 2026049..2026831 (-) 783 WP_032873440.1 VLRF1 family aeRF1-type release factor -
  M1M81_RS09605 (M1M81_09605) - 2027026..2027523 (+) 498 WP_015239999.1 N-acetyltransferase -
  M1M81_RS09610 (M1M81_09610) - 2027588..2028565 (+) 978 WP_032873437.1 S66 peptidase family protein -
  M1M81_RS09615 (M1M81_09615) - 2028597..2028989 (-) 393 WP_025284849.1 hypothetical protein -
  M1M81_RS09620 (M1M81_09620) - 2029152..2030021 (-) 870 WP_007407985.1 3D domain-containing protein -
  M1M81_RS09625 (M1M81_09625) recQ 2030257..2032035 (-) 1779 WP_032873435.1 DNA helicase RecQ Machinery gene
  M1M81_RS09635 (M1M81_09635) - 2032544..2033170 (-) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  M1M81_RS09640 (M1M81_09640) - 2033315..2033806 (-) 492 WP_015417624.1 TraR/DksA C4-type zinc finger protein -
  M1M81_RS09645 (M1M81_09645) gerPC 2033890..2034270 (-) 381 WP_032873433.1 spore germination protein GerPC -
  M1M81_RS09650 (M1M81_09650) - 2034363..2034596 (+) 234 WP_032873431.1 hypothetical protein -
  M1M81_RS09655 (M1M81_09655) - 2034583..2035065 (-) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  M1M81_RS09660 (M1M81_09660) - 2035136..2035408 (+) 273 WP_032873428.1 hypothetical protein -
  M1M81_RS09665 (M1M81_09665) - 2035405..2035638 (+) 234 WP_003153785.1 hypothetical protein -
  M1M81_RS09670 (M1M81_09670) - 2035683..2036027 (-) 345 WP_003153783.1 PH domain-containing protein -
  M1M81_RS09675 (M1M81_09675) - 2036321..2036461 (-) 141 WP_108017290.1 DUF4025 domain-containing protein -
  M1M81_RS09680 (M1M81_09680) - 2036527..2036730 (-) 204 WP_032873426.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66785.37 Da        Isoelectric Point: 6.6858

>NTDB_id=587307 M1M81_RS09625 WP_032873435.1 2030257..2032035(-) (recQ) [Bacillus amyloliquefaciens strain A15.1]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAAACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIKMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=587307 M1M81_RS09625 WP_032873435.1 2030257..2032035(-) (recQ) [Bacillus amyloliquefaciens strain A15.1]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGACCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACGCCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGACCGGTTTATCGAGCGGTATCTGGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCGGATTGGCGGATGA
TGACAGAAAAGACCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGATTCGTTTTACACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAGGAAGCCGGACGG
GCCGGGCGCGATGGTCTTAACAGCGAGTGTGTGCTCTTGTTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGCAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGTATTATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGCTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTCCTTATTTCAGATGAATATATCAAAATGGCG
GACGGCACATTTCCGACGCTTATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACGGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

RQC domain (RQC)

(404-508)

DEAD/DEAH box helicase (DEAD)

(21-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.264

100

0.823