Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KW408_RS08225 Genome accession   NZ_CP078146
Coordinates   1752080..1752676 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain JNQH579     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747080..1757676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW408_RS08205 (KW408_08205) - 1747312..1749069 (-) 1758 WP_012968609.1 Lon protease family protein -
  KW408_RS08210 (KW408_08210) matP 1749255..1749704 (+) 450 WP_049158034.1 macrodomain Ter protein MatP -
  KW408_RS08215 (KW408_08215) ompA 1749815..1750867 (-) 1053 WP_008805892.1 porin OmpA -
  KW408_RS08220 (KW408_08220) sulA 1751220..1751729 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  KW408_RS08225 (KW408_08225) sxy/tfoX 1752080..1752676 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  KW408_RS08230 (KW408_08230) yccS 1752690..1754825 (-) 2136 WP_008805895.1 YccS family putative transporter -
  KW408_RS08235 (KW408_08235) - 1754843..1755289 (-) 447 WP_008805896.1 YccF domain-containing protein -
  KW408_RS08240 (KW408_08240) helD 1755414..1757468 (+) 2055 WP_110204078.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=587303 KW408_RS08225 WP_012542296.1 1752080..1752676(+) (sxy/tfoX) [Klebsiella variicola strain JNQH579]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=587303 KW408_RS08225 WP_012542296.1 1752080..1752676(+) (sxy/tfoX) [Klebsiella variicola strain JNQH579]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505