Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   M1M81_RS07610 Genome accession   NZ_CP096591
Coordinates   1498507..1499529 (+) Length   340 a.a.
NCBI ID   WP_007611255.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain A15.1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493507..1504529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M81_RS07575 (M1M81_07575) - 1493867..1494106 (+) 240 WP_003154475.1 YlbE-like family protein -
  M1M81_RS07580 (M1M81_07580) ylbF 1494177..1494626 (+) 450 WP_032874811.1 YlbF family regulator Regulator
  M1M81_RS07585 (M1M81_07585) - 1494685..1494957 (+) 273 WP_014417705.1 YlbG family protein -
  M1M81_RS07590 (M1M81_07590) rsmD 1495256..1495810 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M1M81_RS07595 (M1M81_07595) coaD 1495815..1496297 (+) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  M1M81_RS07600 (M1M81_07600) ylbJ 1496316..1497542 (-) 1227 WP_032874813.1 sporulation integral membrane protein YlbJ -
  M1M81_RS07605 (M1M81_07605) - 1497722..1498501 (+) 780 WP_014304961.1 patatin family protein -
  M1M81_RS07610 (M1M81_07610) sepM 1498507..1499529 (+) 1023 WP_007611255.1 SepM family pheromone-processing serine protease Regulator
  M1M81_RS07615 (M1M81_07615) - 1499548..1500795 (-) 1248 WP_032874815.1 nucleotidyltransferase -
  M1M81_RS07620 (M1M81_07620) - 1501004..1501522 (+) 519 WP_007611260.1 DUF177 domain-containing protein -
  M1M81_RS07625 (M1M81_07625) rpmF 1501544..1501723 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  M1M81_RS07630 (M1M81_07630) gerR 1501880..1502455 (+) 576 WP_032874817.1 sporulation-specific transcriptional regulator GerR -
  M1M81_RS07635 (M1M81_07635) - 1502495..1502977 (-) 483 WP_007611262.1 N-acetyltransferase -
  M1M81_RS07640 (M1M81_07640) - 1503140..1504021 (+) 882 WP_032874819.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37424.93 Da        Isoelectric Point: 7.3836

>NTDB_id=587288 M1M81_RS07610 WP_007611255.1 1498507..1499529(+) (sepM) [Bacillus amyloliquefaciens strain A15.1]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
SDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=587288 M1M81_RS07610 WP_007611255.1 1498507..1499529(+) (sepM) [Bacillus amyloliquefaciens strain A15.1]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGTTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
TCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.596

100

0.388