Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   M1M81_RS05765 Genome accession   NZ_CP096591
Coordinates   1115310..1116470 (+) Length   386 a.a.
NCBI ID   WP_032874460.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain A15.1     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1110310..1121470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M81_RS05735 (M1M81_05735) - 1111057..1112244 (+) 1188 WP_079891125.1 putative glycoside hydrolase -
  M1M81_RS05740 (M1M81_05740) - 1112362..1112940 (+) 579 WP_032874457.1 GNAT family N-acetyltransferase -
  M1M81_RS05745 (M1M81_05745) spx 1113119..1113514 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  M1M81_RS05750 (M1M81_05750) - 1113571..1114227 (-) 657 WP_032874459.1 TerC family protein -
  M1M81_RS05760 (M1M81_05760) mecA 1114503..1115159 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  M1M81_RS05765 (M1M81_05765) coiA 1115310..1116470 (+) 1161 WP_032874460.1 competence protein CoiA family protein Machinery gene
  M1M81_RS05770 (M1M81_05770) pepF 1116698..1118527 (+) 1830 WP_087920792.1 oligoendopeptidase F Regulator
  M1M81_RS05775 (M1M81_05775) - 1118565..1118732 (-) 168 WP_032874462.1 hypothetical protein -
  M1M81_RS05780 (M1M81_05780) spxH 1119018..1119920 (-) 903 WP_032874464.1 protease adaptor protein SpxH -
  M1M81_RS05785 (M1M81_05785) - 1119917..1120315 (-) 399 WP_032874466.1 thiol management oxidoreductase -
  M1M81_RS05790 (M1M81_05790) - 1120544..1121230 (-) 687 WP_032874468.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44511.32 Da        Isoelectric Point: 10.0424

>NTDB_id=587275 M1M81_RS05765 WP_032874460.1 1115310..1116470(+) (coiA) [Bacillus amyloliquefaciens strain A15.1]
MFSAVTADGRLIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGDERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVNSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTTIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSGRFLSEDADLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RHKEIRMRYGSQDSLIRMAVKQYADFLCLQDFLREIENEVYMPSSQRKLPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=587275 M1M81_RS05765 WP_032874460.1 1115310..1116470(+) (coiA) [Bacillus amyloliquefaciens strain A15.1]
ATGTTCAGTGCTGTGACTGCCGATGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCCGGGGAATCCGAACCTGAAAGCGAATACCATCTTGAAGGAAAAAGACAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCGGGACAGCGGCCTGACTTGACGGCAGA
AAGCGGAGACGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCAATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCATTTTACACCGGCTATTCTTATGCCGGCTTAACCACAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCAAC
AAAAGCGGGCGGTTTTTATCAGAAGATGCCGATCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCATCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTGTTTGCAAGTCCTGTTTTTGTGTGGCAGGGCCATTTAT
ACTTACGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCATAAGGAGATCCGGATGCGGTATGGTTCACAAGATAGCCTTATCAGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.011

97.409

0.448