Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KW063_RS12145 Genome accession   NZ_CP078137
Coordinates   2337432..2338061 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Sx181-0-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2332432..2343061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW063_RS12130 (KW063_12130) helD 2332674..2334728 (-) 2055 WP_001377983.1 DNA helicase IV -
  KW063_RS12135 (KW063_12135) yccF 2334851..2335297 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KW063_RS12140 (KW063_12140) yccS 2335307..2337469 (+) 2163 WP_072135096.1 YccS family putative transporter -
  KW063_RS12145 (KW063_12145) sxy/tfoX 2337432..2338061 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KW063_RS12150 (KW063_12150) sulA 2338280..2338789 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KW063_RS12155 (KW063_12155) ompA 2339146..2340198 (+) 1053 WP_000750419.1 porin OmpA -
  KW063_RS12160 (KW063_12160) matP 2340273..2340725 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KW063_RS12165 (KW063_12165) ycbZ 2340911..2342671 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=587243 KW063_RS12145 WP_000839153.1 2337432..2338061(-) (sxy/tfoX) [Escherichia coli strain Sx181-0-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=587243 KW063_RS12145 WP_000839153.1 2337432..2338061(-) (sxy/tfoX) [Escherichia coli strain Sx181-0-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1