Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   K750_RS06230 Genome accession   NC_021217
Coordinates   1282166..1283479 (-) Length   437 a.a.
NCBI ID   WP_015643719.1    Uniprot ID   A0AB33Z879
Organism   Helicobacter pylori UM037     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277166..1288479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS06200 (K750_01635) nadC 1277635..1278456 (-) 822 WP_015643726.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K750_RS06205 (K750_01630) nadA 1278456..1279460 (-) 1005 WP_015643725.1 quinolinate synthase NadA -
  K750_RS06210 (K750_01625) - 1279450..1280253 (-) 804 WP_015643724.1 phosphatidylserine decarboxylase -
  K750_RS06215 (K750_01620) - 1280247..1280753 (-) 507 WP_000953107.1 DUF6115 domain-containing protein -
  K750_RS06220 (K750_01615) - 1280766..1281260 (-) 495 WP_015643723.1 hypothetical protein -
  K750_RS06225 (K750_08930) mqnP 1281253..1282095 (-) 843 WP_229309609.1 menaquinone biosynthesis prenyltransferase MqnP -
  K750_RS06230 (K750_01595) comEC/comE3 1282166..1283479 (-) 1314 WP_015643719.1 ComEC/Rec2 family competence protein Machinery gene
  K750_RS06235 (K750_01590) - 1283476..1284936 (-) 1461 WP_015643718.1 replicative DNA helicase -
  K750_RS06240 (K750_01585) - 1284947..1286341 (-) 1395 WP_015643717.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  K750_RS06245 (K750_01580) crdS 1286344..1287546 (-) 1203 WP_080218750.1 copper-sensing histidine kinase CrdS -
  K750_RS06250 (K750_01575) crdR 1287512..1288153 (-) 642 WP_015643715.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50211.10 Da        Isoelectric Point: 9.9368

>NTDB_id=58717 K750_RS06230 WP_015643719.1 1282166..1283479(-) (comEC/comE3) [Helicobacter pylori UM037]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYHKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLMRKHNFKSHVRHSIDSAHSSSLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYIPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSICGVWYIFLFLKHTQIFFKNSSFLMRSFQAISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILNMPLTIPTISIPSPLWLLGVHLFLT
IVSARSFKVYLSMNVLSAGFFLYCYYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=58717 K750_RS06230 WP_015643719.1 1282166..1283479(-) (comEC/comE3) [Helicobacter pylori UM037]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCACAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAATGCGAAAACACAATTTCAAATCGCATG
TGCGCCATTCCATTGATAGCGCTCATTCAAGCTCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATATTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCATTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTATTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAAATTCTTCTTTTTTAATGCGATCGTTTCAAGCCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTGTGAGCGCGCGTTCTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCAGGCTTTTTCTTGTATTGTTACTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

92.906

100

0.929

Multiple sequence alignment