Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KWY98_RS08015 Genome accession   NZ_CP078119
Coordinates   1538709..1539320 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533709..1544320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS07990 (KWY98_07990) - 1534184..1534765 (-) 582 WP_003687910.1 superoxide dismutase -
  KWY98_RS07995 (KWY98_07995) dnaB 1534929..1536335 (+) 1407 WP_003687911.1 replicative DNA helicase -
  KWY98_RS08000 (KWY98_08000) pilH 1536490..1537152 (+) 663 WP_003687912.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY98_RS08005 (KWY98_08005) pilI 1537184..1537792 (+) 609 WP_003687913.1 type IV pilus modification protein PilV Machinery gene
  KWY98_RS08010 (KWY98_08010) pilJ 1537789..1538730 (+) 942 WP_003687915.1 PilW family protein Machinery gene
  KWY98_RS08015 (KWY98_08015) pilK 1538709..1539320 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY98_RS08020 (KWY98_08020) pilL 1539322..1539795 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  KWY98_RS08025 (KWY98_08025) - 1539865..1540173 (-) 309 WP_010951048.1 AzlD family protein -
  KWY98_RS08030 (KWY98_08030) - 1540170..1540877 (-) 708 Protein_1552 AzlC family ABC transporter permease -
  KWY98_RS08035 (KWY98_08035) dut 1541043..1541495 (+) 453 WP_003687923.1 dUTP diphosphatase -
  KWY98_RS08040 (KWY98_08040) dapC 1541573..1542760 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  KWY98_RS08045 (KWY98_08045) yaaA 1543071..1543850 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=587142 KWY98_RS08015 WP_003687918.1 1538709..1539320(+) (pilK) [Neisseria gonorrhoeae strain 1291]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=587142 KWY98_RS08015 WP_003687918.1 1538709..1539320(+) (pilK) [Neisseria gonorrhoeae strain 1291]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1