Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY98_RS05135 Genome accession   NZ_CP078119
Coordinates   980222..980539 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975222..985539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS05105 (KWY98_05105) - 975320..975631 (-) 312 WP_003694611.1 hypothetical protein -
  KWY98_RS05110 (KWY98_05110) - 975643..976857 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  KWY98_RS05115 (KWY98_05115) - 977559..977953 (-) 395 Protein_974 pilin -
  KWY98_RS05120 (KWY98_05120) - 978053..978481 (-) 429 Protein_975 pilin -
  KWY98_RS05125 (KWY98_05125) - 978615..979031 (-) 417 Protein_976 pilin -
  KWY98_RS11935 - 979576..980298 (-) 723 WP_353428703.1 pilin -
  KWY98_RS05135 (KWY98_05135) pilE 980222..980539 (-) 318 WP_003697861.1 pilin Machinery gene
  KWY98_RS05140 (KWY98_05140) - 980911..981042 (-) 132 WP_012504086.1 hypothetical protein -
  KWY98_RS05145 (KWY98_05145) - 981124..981813 (-) 690 WP_003687013.1 SprT family zinc-dependent metalloprotease -
  KWY98_RS05150 (KWY98_05150) - 981810..982553 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KWY98_RS05155 (KWY98_05155) gmhB 982583..983146 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  KWY98_RS05160 (KWY98_05160) - 983289..984941 (+) 1653 WP_003687016.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=587124 KWY98_RS05135 WP_003697861.1 980222..980539(-) (pilE) [Neisseria gonorrhoeae strain 1291]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=587124 KWY98_RS05135 WP_003697861.1 980222..980539(-) (pilE) [Neisseria gonorrhoeae strain 1291]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41