Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KWY99_RS09920 Genome accession   NZ_CP078118
Coordinates   1890499..1893708 (-) Length   1069 a.a.
NCBI ID   WP_003695667.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885499..1898708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS09900 (KWY99_09900) mtrC 1886105..1887343 (-) 1239 WP_003695676.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  KWY99_RS09905 (KWY99_09905) mtrR 1887594..1888226 (+) 633 WP_003695674.1 multidrug efflux system transcriptional repressor MtrR -
  KWY99_RS09910 (KWY99_09910) - 1888319..1888531 (-) 213 WP_010358853.1 hypothetical protein -
  KWY99_RS09915 (KWY99_09915) mtrF 1888863..1890431 (+) 1569 WP_003695669.1 AbgT family antimetabolite efflux transporter MtrF -
  KWY99_RS09920 (KWY99_09920) recC 1890499..1893708 (-) 3210 WP_003695667.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KWY99_RS09925 (KWY99_09925) - 1893809..1895218 (-) 1410 WP_003693752.1 PepSY domain-containing protein -
  KWY99_RS09930 (KWY99_09930) ccoP 1895563..1896882 (-) 1320 WP_003695664.1 cytochrome-c oxidase, cbb3-type subunit III -
  KWY99_RS09935 (KWY99_09935) - 1896906..1897076 (-) 171 WP_003693747.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  KWY99_RS09940 (KWY99_09940) ccoO 1897081..1897692 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120300.77 Da        Isoelectric Point: 4.8118

>NTDB_id=587096 KWY99_RS09920 WP_003695667.1 1890499..1893708(-) (recC) [Neisseria gonorrhoeae strain MS11]
MFYLYQSNRLESLAALFARIQKVKPLKCALQPEQIVVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECVSDLLESRFEVGKVLALLETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VDRMVLGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLETLFQAGPDDQK
AVQNLENEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLVAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREGQDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTSVLNS
PKLPPFPYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSEAETRQTFIVQSGETEVLAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLARLLADTLAAAEKREGTGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=587096 KWY99_RS09920 WP_003695667.1 1890499..1893708(-) (recC) [Neisseria gonorrhoeae strain MS11]
ATGTTTTACCTGTACCAATCCAACCGCCTCGAATCGCTCGCTGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATGTGCCTTGCAGCCCGAACAGATTGTTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGCAGAATTTCAAAACGG
AGCGGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGAGAATCGGCGGATTACCAGCTTGCGGGAC
AGCTTGCAGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATCTGACGCAGGCAGGGCATCCGCT
GCTTGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAACGGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAATATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAACCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGGCAACCGTTTTTTTATGCGTTGGAGTGCGTGTCCGACTTGCTGGAAAGCCGTTTTGAAGTCGGCAAAGT
GCTCGCGCTTTTGGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACCGGGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGACCGTATGGTATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGCCCGGATATGGCGGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTTCAAGCCGGGCCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGCACTTTGGCTGGGTTTTTCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGCCGCTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGGTTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTATTTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTTCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCGCCCTTTTTTCGACCAACCCGTAGAAAACG
CCGAACCCGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAACCTGCCGAACCCTTCGATCCGCAACACGCCGATCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACAAGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCCGCCAAACAAATCGACACGTCGGTTTTAAACAGC
CCAAAACTTCCTCCGTTCCCATACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGTCAGGTGTTTTACGCCTACGGCAAACCCAATGCGCCGCAACGTGTGGCTTTTTTGTTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACAGAAGTATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTGTTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ATTACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGCCCGCCTGCTCGCCGACACGCTTGCCGCAGCGGAAAAGAGGGAAGGGACCGG
AGCAGCATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

98.316

100

0.983