Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KWY99_RS05080 Genome accession   NZ_CP078118
Coordinates   960287..960949 (+) Length   220 a.a.
NCBI ID   WP_003687912.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 955287..965949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS05055 (KWY99_05055) cysT 955562..956398 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  KWY99_RS05060 (KWY99_05060) - 956579..956911 (+) 333 WP_003687908.1 hypothetical protein -
  KWY99_RS05065 (KWY99_05065) - 957242..957751 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY99_RS05070 (KWY99_05070) - 957981..958562 (-) 582 WP_003687910.1 superoxide dismutase -
  KWY99_RS05075 (KWY99_05075) dnaB 958726..960132 (+) 1407 WP_003694974.1 replicative DNA helicase -
  KWY99_RS05080 (KWY99_05080) pilH 960287..960949 (+) 663 WP_003687912.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY99_RS05085 (KWY99_05085) pilI 960981..961589 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Machinery gene
  KWY99_RS05090 (KWY99_05090) pilJ 961586..962527 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  KWY99_RS05095 (KWY99_05095) pilK 962506..963117 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY99_RS05100 (KWY99_05100) pilL 963119..963592 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  KWY99_RS05105 (KWY99_05105) - 963662..963970 (-) 309 WP_010951048.1 AzlD family protein -
  KWY99_RS05110 (KWY99_05110) - 963967..964674 (-) 708 Protein_987 AzlC family ABC transporter permease -
  KWY99_RS05115 (KWY99_05115) dut 964840..965292 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24447.88 Da        Isoelectric Point: 9.6283

>NTDB_id=587079 KWY99_RS05080 WP_003687912.1 960287..960949(+) (pilH) [Neisseria gonorrhoeae strain MS11]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=587079 KWY99_RS05080 WP_003687912.1 960287..960949(+) (pilH) [Neisseria gonorrhoeae strain MS11]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

100

100

1