Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KWY99_RS03245 Genome accession   NZ_CP078118
Coordinates   616507..617052 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611507..622052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS03230 (KWY99_03230) aroB 611727..612806 (-) 1080 WP_003687348.1 3-dehydroquinate synthase -
  KWY99_RS03235 (KWY99_03235) - 612886..613398 (-) 513 WP_003687349.1 shikimate kinase -
  KWY99_RS03240 (KWY99_03240) pilQ 614293..616488 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  KWY99_RS03245 (KWY99_03245) pilP 616507..617052 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  KWY99_RS03250 (KWY99_03250) - 617070..617717 (-) 648 WP_003694754.1 type 4a pilus biogenesis protein PilO -
  KWY99_RS03255 (KWY99_03255) pilN 617718..618317 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  KWY99_RS03260 (KWY99_03260) pilM 618320..619435 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  KWY99_RS03265 (KWY99_03265) - 619587..621983 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=587069 KWY99_RS03245 WP_003687351.1 616507..617052(-) (pilP) [Neisseria gonorrhoeae strain MS11]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=587069 KWY99_RS03245 WP_003687351.1 616507..617052(-) (pilP) [Neisseria gonorrhoeae strain MS11]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983