Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KWY95_RS03845 Genome accession   NZ_CP078117
Coordinates   735004..735603 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain SK92679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730004..740603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS03830 (KWY95_03830) pilQ 731579..733774 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  KWY95_RS03835 (KWY95_03835) pilP 733793..734338 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  KWY95_RS03840 (KWY95_03840) - 734356..735003 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  KWY95_RS03845 (KWY95_03845) pilN 735004..735603 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  KWY95_RS03850 (KWY95_03850) pilM 735606..736721 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  KWY95_RS03855 (KWY95_03855) - 736873..739269 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  KWY95_RS03860 (KWY95_03860) yihA 739390..740019 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=587026 KWY95_RS03845 WP_003700890.1 735004..735603(-) (pilN) [Neisseria gonorrhoeae strain SK92679]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=587026 KWY95_RS03845 WP_003700890.1 735004..735603(-) (pilN) [Neisseria gonorrhoeae strain SK92679]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97