Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M1F46_RS06095 Genome accession   NZ_CP096539
Coordinates   1266124..1266897 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain RIVM_M047065     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261124..1271897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F46_RS06075 (M1F46_06070) trmFO 1261468..1262775 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  M1F46_RS06080 (M1F46_06075) xerC 1263192..1264088 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  M1F46_RS06085 (M1F46_06080) hslV 1264085..1264630 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  M1F46_RS06090 (M1F46_06085) hslU 1264696..1266099 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  M1F46_RS06095 (M1F46_06090) codY 1266124..1266897 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M1F46_RS06100 (M1F46_06095) - 1266948..1267040 (+) 93 WP_001790530.1 hypothetical protein -
  M1F46_RS06105 (M1F46_06100) rpsB 1267239..1268006 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  M1F46_RS06110 (M1F46_06105) - 1268040..1268153 (+) 114 WP_001789890.1 hypothetical protein -
  M1F46_RS06115 (M1F46_06110) tsf 1268188..1269069 (+) 882 WP_000201387.1 translation elongation factor Ts -
  M1F46_RS06120 (M1F46_06115) pyrH 1269206..1269928 (+) 723 WP_000057330.1 UMP kinase -
  M1F46_RS06125 (M1F46_06120) frr 1269947..1270501 (+) 555 WP_001280006.1 ribosome recycling factor -
  M1F46_RS06130 (M1F46_06125) - 1270874..1271644 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=586933 M1F46_RS06095 WP_000055337.1 1266124..1266897(+) (codY) [Staphylococcus aureus strain RIVM_M047065]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=586933 M1F46_RS06095 WP_000055337.1 1266124..1266897(+) (codY) [Staphylococcus aureus strain RIVM_M047065]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428