Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KWY94_RS05340 Genome accession   NZ_CP078113
Coordinates   1022585..1023262 (+) Length   225 a.a.
NCBI ID   WP_218461144.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017585..1028262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS05315 (KWY94_05315) cysT 1017718..1018545 (-) 828 WP_047919388.1 sulfate ABC transporter permease subunit CysT -
  KWY94_RS05320 (KWY94_05320) - 1018726..1019058 (+) 333 WP_003687908.1 hypothetical protein -
  KWY94_RS05325 (KWY94_05325) - 1019385..1019894 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY94_RS05330 (KWY94_05330) - 1020126..1020707 (-) 582 WP_003690895.1 superoxide dismutase -
  KWY94_RS05335 (KWY94_05335) dnaB 1020871..1022277 (+) 1407 WP_218461143.1 replicative DNA helicase -
  KWY94_RS05340 (KWY94_05340) pilH 1022585..1023262 (+) 678 WP_218461144.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY94_RS05345 (KWY94_05345) pilI 1023294..1023902 (+) 609 WP_218461145.1 type IV pilus modification protein PilV Machinery gene
  KWY94_RS05350 (KWY94_05350) pilJ 1023899..1024831 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  KWY94_RS05355 (KWY94_05355) pilK 1024810..1025421 (+) 612 WP_218461146.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY94_RS05360 (KWY94_05360) pilL 1025423..1025896 (+) 474 WP_218461157.1 PilX family type IV pilin Machinery gene
  KWY94_RS05365 (KWY94_05365) - 1025966..1026274 (-) 309 WP_025456241.1 AzlD family protein -
  KWY94_RS05370 (KWY94_05370) - 1026271..1026981 (-) 711 Protein_1031 AzlC family ABC transporter permease -
  KWY94_RS05375 (KWY94_05375) dut 1027147..1027599 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24921.32 Da        Isoelectric Point: 8.3384

>NTDB_id=586841 KWY94_RS05340 WP_218461144.1 1022585..1023262(+) (pilH) [Neisseria gonorrhoeae strain O2D156]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTF
GYTTDQHLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=586841 KWY94_RS05340 WP_218461144.1 1022585..1023262(+) (pilH) [Neisseria gonorrhoeae strain O2D156]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGACGGCGATGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATG
CCTTCAACCATATCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTC
GGTTATACGACAGACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGA
TGCGAGAGCAGTTTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTT
GTCCTAAAAACGATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.333

100

0.893