Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KVG00_RS09075 Genome accession   NZ_CP078094
Coordinates   1875227..1876909 (-) Length   560 a.a.
NCBI ID   WP_002343032.1    Uniprot ID   -
Organism   Enterococcus lactis strain JDM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870227..1881909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVG00_RS09045 (KVG00_09045) ftsL 1871500..1871901 (-) 402 WP_002291866.1 cell division protein FtsL -
  KVG00_RS09050 (KVG00_09050) rsmH 1871906..1872865 (-) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  KVG00_RS09055 (KVG00_09055) mraZ 1872886..1873317 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  KVG00_RS09060 (KVG00_09060) - 1873487..1873855 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  KVG00_RS09065 (KVG00_09065) - 1874026..1874982 (+) 957 WP_002291874.1 magnesium transporter CorA family protein -
  KVG00_RS09070 (KVG00_09070) - 1875055..1875171 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  KVG00_RS09075 (KVG00_09075) recN 1875227..1876909 (-) 1683 WP_002343032.1 DNA repair protein RecN Machinery gene
  KVG00_RS09080 (KVG00_09080) - 1876927..1877376 (-) 450 WP_002291879.1 arginine repressor -
  KVG00_RS09085 (KVG00_09085) - 1877483..1878301 (-) 819 WP_002291881.1 TlyA family RNA methyltransferase -
  KVG00_RS09090 (KVG00_09090) - 1878310..1879200 (-) 891 WP_002329021.1 polyprenyl synthetase family protein -
  KVG00_RS09095 (KVG00_09095) - 1879202..1879426 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  KVG00_RS09100 (KVG00_09100) xseA 1879431..1880768 (-) 1338 WP_002315413.1 exodeoxyribonuclease VII large subunit -
  KVG00_RS09105 (KVG00_09105) - 1880769..1881623 (-) 855 WP_002343033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63348.70 Da        Isoelectric Point: 4.5791

>NTDB_id=586733 KVG00_RS09075 WP_002343032.1 1875227..1876909(-) (recN) [Enterococcus lactis strain JDM1]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKVADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=586733 KVG00_RS09075 WP_002343032.1 1875227..1876909(-) (recN) [Enterococcus lactis strain JDM1]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAGTTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5