Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KUD99_RS17780 Genome accession   NZ_CP078087
Coordinates   3784506..3786098 (+) Length   530 a.a.
NCBI ID   WP_017244514.1    Uniprot ID   A0AA42TFA9
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3779506..3791098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS17760 pgeF 3781259..3781996 (-) 738 WP_218421888.1 peptidoglycan editing factor PgeF -
  KUD99_RS17765 rluD 3781993..3782967 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KUD99_RS17770 - 3783172..3784161 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  KUD99_RS17775 - 3784283..3784516 (+) 234 WP_013984074.1 PP0621 family protein -
  KUD99_RS17780 pilS 3784506..3786098 (+) 1593 WP_017244514.1 sensor histidine kinase Regulator
  KUD99_RS17785 pilR 3786229..3787566 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  KUD99_RS17790 - 3787610..3788668 (-) 1059 WP_011914666.1 DUF2333 family protein -
  KUD99_RS17795 - 3788886..3790481 (+) 1596 WP_014597755.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58858.93 Da        Isoelectric Point: 7.8561

>NTDB_id=586653 KUD99_RS17780 WP_017244514.1 3784506..3786098(+) (pilS) [Stutzerimonas stutzeri strain YWX-1]
MGTENLTFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=586653 KUD99_RS17780 WP_017244514.1 3784506..3786098(+) (pilS) [Stutzerimonas stutzeri strain YWX-1]
GTGGGCACTGAGAACCTCACCTTCCTCGGCGATCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAACTGTTTCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGCCGTTCCGAAGCCAGCAGCCAATACGTCCAGGCCGGTGCGCTCGGA
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGGGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCG
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAACTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
GCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGATCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGCAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666