Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KUD99_RS04495 Genome accession   NZ_CP078087
Coordinates   976158..976643 (-) Length   161 a.a.
NCBI ID   WP_218422272.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971158..981643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS04485 - 974798..975307 (-) 510 WP_053069174.1 PilX N-terminal domain-containing pilus assembly protein -
  KUD99_RS04490 - 975313..976149 (-) 837 WP_218422271.1 PilW family protein -
  KUD99_RS04495 pilV 976158..976643 (-) 486 WP_218422272.1 type IV pilus modification protein PilV Machinery gene
  KUD99_RS04500 - 976676..977176 (-) 501 WP_218422570.1 GspH/FimT family pseudopilin -
  KUD99_RS04505 - 977296..977802 (-) 507 WP_102820562.1 GspH/FimT family pseudopilin -
  KUD99_RS04510 thiO 977899..978993 (+) 1095 WP_218422273.1 glycine oxidase ThiO -
  KUD99_RS04515 - 979142..979513 (+) 372 WP_218422274.1 translation initiation factor Sui1 -
  KUD99_RS04520 speA 979636..981549 (+) 1914 WP_218422275.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17104.70 Da        Isoelectric Point: 6.2458

>NTDB_id=586635 KUD99_RS04495 WP_218422272.1 976158..976643(-) (pilV) [Stutzerimonas stutzeri strain YWX-1]
MIEVLITLLLVCIGVLGMVALQGKTIAYTQDSVQRNVAATLANDLIELMRAKPDGLPATSGFYKAKSDAFPSKPATCAPL
PDTASGQLACWAERAKAALPGASDLLESEFYVCRSKAPGNCTTSGSAVEIQLAWRVKAGECMDSSDTGDNTICRYRLRSQ
L

Nucleotide


Download         Length: 486 bp        

>NTDB_id=586635 KUD99_RS04495 WP_218422272.1 976158..976643(-) (pilV) [Stutzerimonas stutzeri strain YWX-1]
ATGATCGAAGTCCTCATCACCCTGCTATTGGTCTGTATTGGCGTCTTGGGGATGGTCGCCCTGCAGGGTAAGACCATCGC
CTACACGCAGGACTCGGTTCAACGCAATGTAGCCGCGACCCTGGCGAATGACCTTATCGAGTTGATGAGGGCCAAGCCTG
ACGGCTTACCGGCTACGTCAGGCTTCTATAAGGCCAAGTCGGACGCCTTTCCAAGCAAACCCGCCACCTGCGCCCCACTA
CCGGACACAGCAAGCGGCCAGCTGGCCTGCTGGGCCGAGCGCGCAAAGGCGGCGCTACCCGGCGCCTCGGACCTGCTCGA
GAGCGAATTCTATGTGTGCCGGTCCAAGGCCCCTGGCAATTGCACCACCAGCGGCTCAGCCGTGGAAATACAGTTGGCCT
GGCGGGTCAAGGCTGGTGAATGCATGGACTCCAGCGACACCGGCGACAACACCATTTGCCGCTACCGGCTGCGCAGCCAG
CTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

52.976

100

0.553