Detailed information NTG0586622

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: KU891_RS25000
• Genome accession: NZ_CP078081
• Coordinates: 4829173..4830522 (-)
• Length: 449 a.a.
• NCBI ID: WP_071708743.1
• Uniprot ID: -
• Organism: Bacillus tropicus strain EMB20
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4824173..4835522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KU891_RS24980 (KU891_24910)	secA	4824493..4827000 (-)	2508	WP_000579383.1	preprotein translocase subunit SecA	-
KU891_RS24985 (KU891_24915)	raiA	4827275..4827817 (-)	543	WP_000671191.1	ribosome-associated translation inhibitor RaiA	-
KU891_RS24990 (KU891_24920)	cspC	4828141..4828338 (-)	198	WP_001990088.1	cold shock protein CspC	-
KU891_RS24995 (KU891_24925)	-	4828465..4829169 (-)	705	WP_001975266.1	ComF family protein	-
KU891_RS25000 (KU891_24930)	comFA	4829173..4830522 (-)	1350	WP_071708743.1	ATP-dependent helicase ComFA	Machinery gene
KU891_RS25005 (KU891_24935)	-	4830650..4832068 (-)	1419	WP_003268117.1	C40 family peptidase	-
KU891_RS25010 (KU891_24940)	-	4832215..4832529 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
KU891_RS25015 (KU891_24945)	-	4832703..4833545 (-)	843	WP_000844763.1	DegV family protein	-
KU891_RS25020 (KU891_24950)	-	4833785..4834420 (+)	636	WP_000926681.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51193.65 Da
• Isoelectric Point: 9.1729

>NTDB_id=586622 KU891_RS25000 WP_071708743.1 4829173..4830522(-) (comFA) [Bacillus tropicus strain EMB20]
MFAGKQLLLEEISSDLRRELSDLKEKGEIVCVQGVIKRDSKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECTVLVRGIHERKGERELNSLQWEGALATGQELAAQGVIEVIQQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVMELAPRLQEVFPSINVAALYGGSVDHEKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEDVSLLLKGLDNRIDGVHAEDPMRKEKVTSFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEVFSESALV
QIAGRAGRSFEEPCGEVMYFHYGKTEAMVRAKKHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=586622 KU891_RS25000 WP_071708743.1 4829173..4830522(-) (comFA) [Bacillus tropicus strain EMB20]
ATGTTTGCTGGGAAACAGTTGCTATTAGAAGAAATATCTTCAGACTTAAGGAGAGAATTAAGTGATTTAAAAGAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAATAAAGAGGGATTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGCATAACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGCGAAAGGGAATTAAATTCGTTACAGTGGGAAGGTGCATT
GGCTACTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGTGATTCAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACA
CCAAGGACGGACGTTGTAATGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGAGGGAAACAAAA
AGGTATCATTGTTTCGGGAAGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTATTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGATGTGAGTCTGTTATTGAAAGGGTTGGATAATCGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGACATCCTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCGGAAGAAGAAGTTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTGTGGCGAGGTTATGTATTTTCATTACGGTAAGACAGAAGC
GATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTGATTGATTGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (102-254)

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.461	96.659	0.488
comFA	Latilactobacillus sakei subsp. sakei 23K	41.709	88.641	0.37