Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KU891_RS20615 Genome accession   NZ_CP078081
Coordinates   4023493..4024239 (-) Length   248 a.a.
NCBI ID   WP_000487004.1    Uniprot ID   A0A853XAR0
Organism   Bacillus tropicus strain EMB20     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4018493..4029239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS20600 (KU891_20535) dnaG 4019262..4021058 (-) 1797 WP_000528216.1 DNA primase -
  KU891_RS20605 (KU891_20540) - 4021911..4022723 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  KU891_RS20610 (KU891_20545) - 4022753..4023385 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  KU891_RS20615 (KU891_20550) recO 4023493..4024239 (-) 747 WP_000487004.1 DNA repair protein RecO Machinery gene
  KU891_RS20620 (KU891_20555) - 4024273..4024416 (-) 144 WP_000883924.1 YqzL family protein -
  KU891_RS20625 (KU891_20560) era 4024593..4025498 (-) 906 WP_001080242.1 GTPase Era -
  KU891_RS20630 (KU891_20565) - 4025491..4025889 (-) 399 WP_001086294.1 cytidine deaminase -
  KU891_RS20635 (KU891_20570) - 4025989..4026342 (-) 354 WP_000715478.1 diacylglycerol kinase family protein -
  KU891_RS20640 (KU891_20575) ybeY 4026339..4026809 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  KU891_RS20645 (KU891_20580) - 4026806..4028950 (-) 2145 WP_000946447.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28677.28 Da        Isoelectric Point: 8.0540

>NTDB_id=586612 KU891_RS20615 WP_000487004.1 4023493..4024239(-) (recO) [Bacillus tropicus strain EMB20]
MFQKVEGIVIRTIDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=586612 KU891_RS20615 WP_000487004.1 4023493..4024239(-) (recO) [Bacillus tropicus strain EMB20]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGATAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853XAR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552