Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KU891_RS19980 Genome accession   NZ_CP078081
Coordinates   3915299..3916093 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus tropicus strain EMB20     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3910299..3921093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS19960 (KU891_19895) - 3912100..3912333 (+) 234 WP_001190188.1 DUF2627 domain-containing protein -
  KU891_RS19965 (KU891_19900) - 3912383..3913111 (-) 729 WP_042989520.1 glycerophosphodiester phosphodiesterase -
  KU891_RS19970 (KU891_19905) - 3913163..3913309 (+) 147 WP_001247671.1 YycC family protein -
  KU891_RS19975 (KU891_19910) - 3913477..3915003 (-) 1527 WP_000216568.1 glycosyltransferase family 39 protein -
  KU891_RS19980 (KU891_19915) spo0A 3915299..3916093 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  KU891_RS19985 (KU891_19920) spoIVB 3916381..3917679 (-) 1299 WP_003267478.1 SpoIVB peptidase -
  KU891_RS19990 (KU891_19925) recN 3917798..3919537 (-) 1740 WP_000947747.1 DNA repair protein RecN Machinery gene
  KU891_RS19995 (KU891_19930) argR 3919805..3920254 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=586609 KU891_RS19980 WP_033686380.1 3915299..3916093(-) (spo0A) [Bacillus tropicus strain EMB20]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=586609 KU891_RS19980 WP_033686380.1 3915299..3916093(-) (spo0A) [Bacillus tropicus strain EMB20]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCAGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGTCAAGAAGATGTGACGAAAAAAGCGGTTGACTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCAAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGAAAGCCGAAAAATTTAGATGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGATATATGTATTTAAGAGAAGCAATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACAAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGTGCAATCC
GTCATGCAATTGAAGTAGCGTGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTCATTGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818