Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KU891_RS09720 Genome accession   NZ_CP078081
Coordinates   1905734..1906021 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus tropicus strain EMB20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900734..1911021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS09700 (KU891_09690) - 1901920..1902117 (+) 198 WP_001048099.1 DUF4083 domain-containing protein -
  KU891_RS09705 (KU891_09695) - 1902141..1902602 (+) 462 WP_061401770.1 NUDIX hydrolase -
  KU891_RS09710 (KU891_09700) nadE 1902648..1903466 (-) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  KU891_RS09715 (KU891_09705) - 1903738..1905618 (+) 1881 WP_001026028.1 ABC transporter permease -
  KU891_RS09720 (KU891_09710) abrB 1905734..1906021 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KU891_RS09725 (KU891_09715) - 1906295..1907245 (+) 951 WP_061401769.1 serine protease -
  KU891_RS09730 (KU891_09720) galT 1907457..1908947 (+) 1491 WP_061401768.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  KU891_RS09735 (KU891_09725) - 1909060..1909368 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  KU891_RS09740 (KU891_09730) - 1909475..1910410 (+) 936 WP_061401767.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=586602 KU891_RS09720 WP_000648330.1 1905734..1906021(+) (abrB) [Bacillus tropicus strain EMB20]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=586602 KU891_RS09720 WP_000648330.1 1905734..1906021(+) (abrB) [Bacillus tropicus strain EMB20]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
GATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516