Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KU891_RS07765 Genome accession   NZ_CP078081
Coordinates   1500647..1501249 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus tropicus strain EMB20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495647..1506249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS07745 (KU891_07735) dnaD 1495957..1496664 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  KU891_RS07750 (KU891_07740) nth 1496680..1497327 (+) 648 WP_000933017.1 endonuclease III -
  KU891_RS07755 (KU891_07745) - 1497331..1497849 (+) 519 WP_000442667.1 YpoC family protein -
  KU891_RS07760 (KU891_07750) - 1497873..1500581 (-) 2709 WP_001283109.1 PBP1A family penicillin-binding protein -
  KU891_RS07765 (KU891_07755) recU 1500647..1501249 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  KU891_RS07770 (KU891_07760) - 1501353..1502378 (+) 1026 WP_061402067.1 DUF2515 domain-containing protein -
  KU891_RS07775 (KU891_07765) - 1502635..1502811 (-) 177 WP_002020884.1 hypothetical protein -
  KU891_RS07780 (KU891_07770) - 1502897..1503139 (+) 243 WP_001252039.1 hypothetical protein -
  KU891_RS07785 (KU891_07775) - 1503155..1503499 (+) 345 WP_000872963.1 YppE family protein -
  KU891_RS07790 (KU891_07780) - 1503524..1503715 (-) 192 WP_000242660.1 YppF family protein -
  KU891_RS07795 (KU891_07785) - 1503893..1504393 (+) 501 WP_000487702.1 YppG family protein -
  KU891_RS07800 (KU891_07790) - 1504548..1504973 (+) 426 WP_000546265.1 CotD family spore coat protein -
  KU891_RS07805 (KU891_07795) - 1505032..1505586 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  KU891_RS07810 (KU891_07800) gpsB 1505684..1506022 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=586601 KU891_RS07765 WP_000155593.1 1500647..1501249(-) (recU) [Bacillus tropicus strain EMB20]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=586601 KU891_RS07765 WP_000155593.1 1500647..1501249(-) (recU) [Bacillus tropicus strain EMB20]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625