Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KU891_RS06020 Genome accession   NZ_CP078081
Coordinates   1184440..1186266 (+) Length   608 a.a.
NCBI ID   WP_061403202.1    Uniprot ID   -
Organism   Bacillus tropicus strain EMB20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179440..1191266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS06000 (KU891_05995) - 1179749..1180423 (-) 675 WP_000362614.1 TerC family protein -
  KU891_RS06005 (KU891_06000) mecA 1180764..1181447 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  KU891_RS06010 (KU891_06005) - 1181520..1183064 (+) 1545 WP_000799204.1 cardiolipin synthase -
  KU891_RS06015 (KU891_06010) - 1183145..1184389 (+) 1245 WP_248139607.1 competence protein CoiA family protein -
  KU891_RS06020 (KU891_06015) pepF 1184440..1186266 (+) 1827 WP_061403202.1 oligoendopeptidase F Regulator
  KU891_RS06025 (KU891_06020) - 1186386..1186559 (-) 174 WP_000754593.1 hypothetical protein -
  KU891_RS06030 (KU891_06025) - 1186789..1187682 (-) 894 WP_000360642.1 ClpXP adapter SpxH family protein -
  KU891_RS06035 (KU891_06030) - 1187682..1188080 (-) 399 WP_000043380.1 hypothetical protein -
  KU891_RS06040 (KU891_06035) - 1188259..1188837 (-) 579 WP_061403201.1 CYTH domain-containing protein -
  KU891_RS06045 (KU891_06040) - 1188982..1189353 (+) 372 WP_001180001.1 hypothetical protein -
  KU891_RS06050 (KU891_06045) - 1189384..1190022 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  KU891_RS06055 (KU891_06050) - 1190041..1190838 (+) 798 WP_000673185.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70275.56 Da        Isoelectric Point: 4.6688

>NTDB_id=586598 KU891_RS06020 WP_061403202.1 1184440..1186266(+) (pepF) [Bacillus tropicus strain EMB20]
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYNLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=586598 KU891_RS06020 WP_061403202.1 1184440..1186266(+) (pepF) [Bacillus tropicus strain EMB20]
ATGTCTGAACAAAATACAGCAAAAGCATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTTTTAA
AAGAAAATAGAGACTTAAGCGTATATGAACATGCATTAGAAGAAATTACACGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTTCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGTAAATATGACTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATCCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCCTATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATAATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACACCAGACATGTTAACGGAGATCTACTATAATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACAGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488