Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   KUD94_RS14625 Genome accession   NZ_CP078069
Coordinates   3030352..3030756 (+) Length   134 a.a.
NCBI ID   WP_146911960.1    Uniprot ID   A0A5B8RUL5
Organism   Comamonas sp. NLF-1-9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025352..3035756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD94_RS14605 (KUD94_14605) - 3025987..3026226 (+) 240 WP_146911964.1 helix-turn-helix domain-containing protein -
  KUD94_RS14610 (KUD94_14610) purH 3026309..3027913 (+) 1605 WP_218237885.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  KUD94_RS14615 (KUD94_14615) - 3027948..3028835 (+) 888 WP_218239320.1 EamA family transporter -
  KUD94_RS14620 (KUD94_14620) hemL 3028827..3030140 (-) 1314 WP_218237886.1 glutamate-1-semialdehyde 2,1-aminomutase -
  KUD94_RS14625 (KUD94_14625) pilG 3030352..3030756 (+) 405 WP_146911960.1 PleD family two-component system response regulator Regulator
  KUD94_RS14630 (KUD94_14630) - 3030756..3031121 (+) 366 WP_146911959.1 response regulator transcription factor -
  KUD94_RS14635 (KUD94_14635) - 3031141..3031671 (+) 531 WP_218237887.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14805.06 Da        Isoelectric Point: 7.8204

>NTDB_id=586554 KUD94_RS14625 WP_146911960.1 3030352..3030756(+) (pilG) [Comamonas sp. NLF-1-9]
MATATTGPTIKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTVAIIKRNPR
FADTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFGRVQPGAQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=586554 KUD94_RS14625 WP_146911960.1 3030352..3030756(+) (pilG) [Comamonas sp. NLF-1-9]
TTGGCGACAGCGACTACCGGTCCCACGATCAAGGTGCTCGTGGTAGACGACAGCAACACGATCCGGCGCAGCGCCGAAAT
ATTCCTCAAACAGGGTGGTCACGAGGTCTTGCTTGCCGACGATGGCTTTGATGCCCTCTCCAAGGTCAACGACTACCAGC
CTCAACTCATTTTTTGCGACATCCTCATGCCCAAGCTCGATGGCTACCAGACCGTGGCCATCATCAAGCGCAACCCGCGT
TTTGCCGACACCCCGGTGGTCATGCTGTCCTCCAAGGACGGCGTCTTCGACAAGGCGCGCGGGCGCATGGTGGGCTGCCA
GGACTACCTCACCAAACCCTTTACCAAGGATCAGTTGCTGCAGGCAGTGCAGCAATTTGGCCGTGTGCAACCAGGAGCTC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8RUL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.41

87.313

0.493