Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KUD94_RS11070 Genome accession   NZ_CP078069
Coordinates   2307191..2308573 (-) Length   460 a.a.
NCBI ID   WP_218237259.1    Uniprot ID   -
Organism   Comamonas sp. NLF-1-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302191..2313573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD94_RS14790 - 2302210..2302338 (-) 129 WP_255568737.1 hypothetical protein -
  KUD94_RS11040 (KUD94_11040) - 2302410..2303489 (+) 1080 WP_218237253.1 nitronate monooxygenase family protein -
  KUD94_RS11045 (KUD94_11045) - 2303467..2304738 (-) 1272 WP_218237254.1 O-antigen ligase -
  KUD94_RS11050 (KUD94_11050) - 2304735..2305508 (-) 774 WP_218237255.1 glycosyltransferase family 2 protein -
  KUD94_RS11055 (KUD94_11055) - 2305584..2305790 (-) 207 WP_218237256.1 zinc-finger domain-containing protein -
  KUD94_RS11060 (KUD94_11060) - 2305796..2306734 (-) 939 WP_218237257.1 branched-chain amino acid transaminase -
  KUD94_RS11065 (KUD94_11065) - 2306774..2307187 (-) 414 WP_218237258.1 glycerate kinase -
  KUD94_RS11070 (KUD94_11070) radA 2307191..2308573 (-) 1383 WP_218237259.1 DNA repair protein RadA Machinery gene
  KUD94_RS11075 (KUD94_11075) - 2308706..2309464 (-) 759 WP_218237260.1 hypothetical protein -
  KUD94_RS11080 (KUD94_11080) alr 2309485..2310582 (-) 1098 WP_218237261.1 alanine racemase -
  KUD94_RS11085 (KUD94_11085) lplT 2310728..2311990 (+) 1263 WP_218237262.1 lysophospholipid transporter LplT -
  KUD94_RS11090 (KUD94_11090) - 2312040..2312918 (+) 879 WP_218237263.1 DMT family transporter -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47582.05 Da        Isoelectric Point: 7.6501

>NTDB_id=586546 KUD94_RS11070 WP_218237259.1 2307191..2308573(-) (radA) [Comamonas sp. NLF-1-9]
MAKEKTLYTCNECGASSPRWLGKCPGCGAWNTLVETAGEVPGAGKNRLSGAQYAGLAPAQQVVPLSSIEASEVARTATGI
AELDRVLGGGIVEGGVALIGGDPGIGKSTLLLQALDALQRLGLPVLYVSGEESGAQVALRARRLGLAGSGVQVLAEIQLE
KILATVDAVQPAVCVIDSIQTMYSDQLASAPGSVAQVRECAAHLTRLAKASGIAVVLVGHVTKEGAIAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEHGLKGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDG
GGPSPRRLSVGLDRDRLAMLLAVLHRHAGVACFDQDVFVNAVGGVRIAEPAADLAVLLAISSSLRAKPLPKGFIAFGEVG
LAGEVRPAPRGQERLREAAKLGFAVAVVPKANAPKKPIAGLAIHAVDRVEQALDAVRALS

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=586546 KUD94_RS11070 WP_218237259.1 2307191..2308573(-) (radA) [Comamonas sp. NLF-1-9]
ATGGCCAAGGAAAAAACCCTCTACACCTGCAATGAATGCGGCGCCAGCAGCCCGCGCTGGCTGGGCAAATGCCCGGGCTG
CGGCGCCTGGAACACGCTGGTGGAAACCGCGGGCGAAGTCCCCGGCGCGGGCAAGAACCGCCTGAGCGGCGCGCAGTACG
CGGGCCTGGCGCCGGCGCAGCAAGTCGTGCCGCTGTCCAGCATCGAAGCGAGCGAAGTCGCGCGCACGGCGACCGGCATC
GCCGAGCTGGACCGAGTGCTGGGCGGCGGCATCGTCGAGGGCGGCGTGGCGCTGATCGGGGGCGATCCGGGCATAGGCAA
ATCCACGCTGCTGCTGCAGGCGCTGGACGCGCTGCAGCGCCTGGGCCTGCCGGTGCTCTACGTGAGCGGCGAAGAAAGCG
GCGCGCAGGTGGCGCTGCGCGCGCGCCGCCTGGGCCTGGCGGGCAGCGGCGTGCAGGTGCTGGCCGAAATCCAGCTGGAA
AAAATCCTTGCCACCGTCGATGCGGTGCAGCCCGCCGTCTGCGTGATCGACTCCATCCAGACGATGTATTCCGACCAGCT
CGCCAGCGCTCCGGGCAGCGTCGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCCTGGCCAAGGCCAGCGGCATCG
CGGTGGTGCTGGTCGGCCACGTCACCAAGGAGGGCGCCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACACCGTG
CTCTACTTCGAGGGCGACACGCACAGCAGCTTTCGCCTGGTGCGCGCGATCAAGAACCGCTTTGGCGCCGTGAACGAAAT
CGGCGTCTTCGCGATGACCGAGCACGGCCTCAAGGGCGTATCCAACCCGAGCGCGATCTTCCTGAGCCAGCACAGCGAGC
CGGTGCCCGGCTCCTGCGTGCTCGTCACGCTGGAGGGCACGCGCCCGCTGCTGGTGGAAATCCAGGCCTTGGTCGATGGC
GGCGGACCCAGTCCGCGGCGGCTGTCCGTGGGGCTCGATCGAGATCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
TGCGGGCGTGGCCTGCTTTGACCAGGACGTGTTCGTCAACGCGGTAGGCGGCGTGCGCATCGCCGAGCCCGCGGCCGACC
TGGCGGTGCTGCTGGCCATCAGCTCCAGCCTGCGCGCCAAACCCCTGCCCAAGGGCTTCATCGCCTTTGGCGAGGTTGGC
CTGGCCGGCGAGGTGCGCCCGGCCCCGCGCGGGCAGGAGCGGCTGAGGGAAGCGGCCAAACTCGGCTTTGCCGTTGCCGT
CGTGCCCAAGGCCAACGCACCCAAAAAACCCATCGCCGGCCTGGCCATCCACGCCGTGGACCGCGTGGAGCAGGCGCTGG
ACGCGGTGCGCGCCCTCAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

99.13

0.493
  radA Streptococcus mitis NCTC 12261

46.389

99.348

0.461
  radA Streptococcus pneumoniae Rx1

48.157

94.348

0.454
  radA Streptococcus pneumoniae D39

48.157

94.348

0.454
  radA Streptococcus pneumoniae R6

48.157

94.348

0.454
  radA Streptococcus pneumoniae TIGR4

48.157

94.348

0.454
  radA Streptococcus mitis SK321

48.157

94.348

0.454