Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KUD94_RS07585 Genome accession   NZ_CP078069
Coordinates   1565733..1566860 (+) Length   375 a.a.
NCBI ID   WP_218236338.1    Uniprot ID   -
Organism   Comamonas sp. NLF-1-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1560733..1571860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD94_RS07565 (KUD94_07565) coaD 1561661..1562188 (-) 528 WP_218236331.1 pantetheine-phosphate adenylyltransferase -
  KUD94_RS07570 (KUD94_07570) rsmD 1562283..1562873 (-) 591 WP_218236333.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KUD94_RS07575 (KUD94_07575) - 1562870..1564249 (-) 1380 WP_218236335.1 pitrilysin family protein -
  KUD94_RS07580 (KUD94_07580) - 1564261..1565703 (-) 1443 WP_218236337.1 pitrilysin family protein -
  KUD94_RS07585 (KUD94_07585) pilA 1565733..1566860 (+) 1128 WP_218236338.1 signal recognition particle-docking protein FtsY Machinery gene
  KUD94_RS07590 (KUD94_07590) - 1567154..1567489 (-) 336 WP_218236340.1 serine/threonine protein kinase -
  KUD94_RS07600 (KUD94_07600) - 1567902..1569212 (+) 1311 WP_255568647.1 integrase -
  KUD94_RS07605 (KUD94_07605) - 1569311..1569634 (+) 324 WP_218236342.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KUD94_RS07610 (KUD94_07610) - 1569631..1569924 (+) 294 WP_218236344.1 addiction module antidote protein -
  KUD94_RS07615 (KUD94_07615) - 1570166..1570693 (+) 528 WP_255568649.1 AlpA family transcriptional regulator -
  KUD94_RS07620 (KUD94_07620) - 1570704..1570952 (+) 249 WP_218236346.1 hypothetical protein -
  KUD94_RS07625 (KUD94_07625) - 1570949..1571326 (+) 378 WP_218236347.1 helix-turn-helix domain-containing protein -
  KUD94_RS07630 (KUD94_07630) - 1571323..1571604 (+) 282 WP_218236349.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 38871.50 Da        Isoelectric Point: 9.3921

>NTDB_id=586543 KUD94_RS07585 WP_218236338.1 1565733..1566860(+) (pilA) [Comamonas sp. NLF-1-9]
MFSFFRKKTPPAPAPAAPAASDADKVQSQGSGPPHSTPAPSPAAAPAPATPAAPSTAAPPTATADAQAAPPAMAEAPRQS
WMARLSAGLRKTGSSITTVFTGTRIDEALYEELEDALLMADTGVKATTALLQTLRRKVKERKAADPAAVRALLAEALAEL
LQPLEKPLVIGAHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGQSVLLAAADTFRAAAREQLGVWATRNTVDIISQQGGD
PAAVSFDAVSAGRARGKDVVLVDTAGRLPTQLHLMQELTKIRRVITKADASAPHEVLLVIDGNTGQNALAQVKAFDEALQ
LTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEQVQDLQTFKAREFADALLG

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=586543 KUD94_RS07585 WP_218236338.1 1565733..1566860(+) (pilA) [Comamonas sp. NLF-1-9]
ATGTTCAGCTTCTTCAGGAAAAAAACCCCGCCAGCGCCCGCCCCTGCCGCGCCCGCAGCGTCCGATGCGGACAAGGTCCA
GAGTCAGGGCAGTGGGCCGCCCCACTCGACTCCGGCTCCGTCGCCGGCTGCAGCCCCTGCCCCAGCCACGCCGGCAGCAC
CTTCGACAGCCGCGCCACCCACAGCCACCGCCGACGCCCAAGCCGCCCCGCCGGCCATGGCCGAGGCGCCCCGCCAGAGC
TGGATGGCGCGCCTGTCGGCCGGTTTGCGCAAGACCGGCAGCAGCATCACCACCGTCTTTACCGGCACGCGCATCGACGA
GGCCTTGTACGAAGAGCTCGAAGACGCCCTGCTCATGGCCGACACCGGCGTGAAGGCCACCACCGCGCTGTTGCAGACCC
TGAGGCGCAAGGTCAAGGAACGCAAGGCCGCCGACCCGGCCGCCGTCAGGGCGCTGCTGGCCGAGGCGCTCGCCGAGCTG
CTGCAACCGCTGGAAAAACCCCTGGTCATAGGCGCGCACCAGCCCACGGTAATCATGGTTGCGGGCGTCAATGGCGCGGG
CAAGACCACCTCCATCGGCAAGCTCACGCGGCACCTGGCCGACCACGGCCAGAGCGTGCTGCTGGCTGCGGCCGACACCT
TCCGCGCCGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCGCAACACCGTGGACATCATCAGCCAGCAGGGGGGCGAC
CCGGCTGCGGTGAGCTTTGACGCAGTGAGCGCCGGCCGCGCCCGCGGCAAGGACGTGGTGCTGGTAGACACCGCCGGGCG
CCTGCCCACGCAACTGCACCTGATGCAAGAGCTCACCAAGATCCGCCGCGTGATCACCAAGGCCGACGCCAGCGCCCCGC
ACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCCCTCGCCCAGGTCAAGGCCTTCGACGAGGCGCTGCAG
CTCACCGGCCTGATCGTCACCAAACTCGACGGCACCGCCAAGGGCGGCGTGCTCGCCGCCATCGCGCAGGAGCGCCCGGT
GCCGGTCTATTTCATCGGCGTGGGCGAGCAGGTGCAAGACTTGCAAACCTTCAAGGCACGGGAATTCGCCGACGCGCTGC
TGGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(175-375)

SRP54-type protein, helical bundle domain (SRP54_N)

(93-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

55.132

90.933

0.501