Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   EVX74_RS06605 Genome accession   NZ_CP078045
Coordinates   1363947..1364456 (+) Length   169 a.a.
NCBI ID   WP_165353907.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain AL_065     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358947..1369456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVX74_RS06575 (EVX74_006530) kdsB 1359826..1360587 (+) 762 WP_129716639.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EVX74_RS06580 (EVX74_006535) - 1360602..1361582 (+) 981 WP_129716641.1 DNA polymerase III subunit delta' -
  EVX74_RS06585 (EVX74_006540) - 1361598..1361939 (+) 342 WP_004278877.1 PilZ domain-containing protein -
  EVX74_RS06590 (EVX74_006545) - 1361967..1362740 (+) 774 WP_005106566.1 TatD family hydrolase -
  EVX74_RS06595 (EVX74_006550) - 1362782..1363396 (+) 615 WP_129716643.1 TetR/AcrR family transcriptional regulator -
  EVX74_RS06600 (EVX74_006555) - 1363406..1363957 (+) 552 WP_129716645.1 type II secretion system protein -
  EVX74_RS06605 (EVX74_006560) xcpV 1363947..1364456 (+) 510 WP_165353907.1 type II secretion system minor pseudopilin GspI Machinery gene
  EVX74_RS06610 (EVX74_006565) xcpW 1364453..1365094 (+) 642 WP_129716649.1 type II secretion system minor pseudopilin GspJ Machinery gene
  EVX74_RS06615 (EVX74_006570) gspK 1365101..1366072 (+) 972 WP_129716651.1 type II secretion system minor pseudopilin GspK -
  EVX74_RS06620 (EVX74_006575) - 1366225..1366821 (+) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  EVX74_RS06625 (EVX74_006580) ung 1366868..1367581 (+) 714 WP_005247316.1 uracil-DNA glycosylase -
  EVX74_RS06630 (EVX74_006585) - 1367578..1368699 (+) 1122 WP_129716653.1 enoyl-CoA hydratase/isomerase family protein -
  EVX74_RS06635 (EVX74_006590) tadA 1368706..1369221 (+) 516 WP_129716655.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18997.80 Da        Isoelectric Point: 10.5802

>NTDB_id=586508 EVX74_RS06605 WP_165353907.1 1363947..1364456(+) (xcpV) [Acinetobacter lwoffii strain AL_065]
MKSRYFKQNTGFGAIRPSITRLNRVHSEQSSLSCARTKRCFIYPRSGFTLLEVMVALAIFATAAMTLTKVAMQYTQSTSN
AILRTKAQFIALNEVAQMEINQQWMDGTASKQLTQQGETWQIDKRSEPTISPNVQRIELQVSLVNPDTGQVASGISSLMF
FNHRMNNTP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=586508 EVX74_RS06605 WP_165353907.1 1363947..1364456(+) (xcpV) [Acinetobacter lwoffii strain AL_065]
ATGAAATCTAGATATTTCAAGCAGAATACTGGATTTGGTGCTATCAGGCCGAGTATTACTCGGCTTAATCGTGTGCACTC
TGAACAGAGTTCGTTATCTTGCGCTCGGACGAAACGTTGTTTCATTTATCCTCGCTCAGGTTTTACCTTGTTGGAAGTCA
TGGTGGCCTTGGCAATTTTTGCGACCGCAGCCATGACCTTGACCAAAGTTGCAATGCAATATACCCAGTCAACCTCGAAT
GCCATTCTGCGCACCAAAGCACAGTTTATTGCCCTGAACGAAGTGGCTCAAATGGAAATCAATCAGCAATGGATGGATGG
TACGGCCTCCAAACAGCTGACCCAGCAAGGCGAAACCTGGCAAATTGACAAGCGCAGTGAACCGACGATCAGTCCCAATG
TGCAGCGTATTGAACTACAGGTCAGTCTAGTGAATCCGGATACTGGCCAGGTTGCATCCGGGATCAGCAGCTTGATGTTC
TTTAATCATCGCATGAACAATACGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(45-67)

Type II secretion system (T2SS), protein I (T2SSI)

(84-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.214

69.231

0.521