Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   EGT68_RS13675 Genome accession   NZ_CP078042
Coordinates   2871690..2872016 (-) Length   108 a.a.
NCBI ID   WP_125272409.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866690..2877016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13655 (EGT68_013655) - 2866946..2867557 (-) 612 WP_125272407.1 FHA domain-containing protein -
  EGT68_RS13660 (EGT68_013660) gspD 2867621..2869876 (-) 2256 WP_004957392.1 type II secretion system secretin GspD -
  EGT68_RS13665 (EGT68_013665) - 2869918..2870766 (-) 849 WP_125272408.1 type II secretion system protein N -
  EGT68_RS13670 (EGT68_013670) gspN 2870766..2871509 (-) 744 WP_039046893.1 type II secretion system protein N -
  EGT68_RS13675 (EGT68_013675) hns 2871690..2872016 (-) 327 WP_125272409.1 H-NS histone family protein Regulator
  EGT68_RS13680 (EGT68_013680) - 2872399..2872830 (-) 432 WP_004957383.1 thioesterase family protein -
  EGT68_RS13685 (EGT68_013685) - 2872839..2874032 (-) 1194 WP_004957381.1 hypothetical protein -
  EGT68_RS13690 (EGT68_013690) - 2874039..2874869 (-) 831 WP_125272410.1 hypothetical protein -
  EGT68_RS13695 (EGT68_013695) - 2874866..2875642 (-) 777 WP_125272411.1 uroporphyrinogen-III synthase -
  EGT68_RS13700 (EGT68_013700) hemC 2875644..2876561 (-) 918 WP_125272412.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12342.01 Da        Isoelectric Point: 5.3322

>NTDB_id=586482 EGT68_RS13675 WP_125272409.1 2871690..2872016(-) (hns) [Acinetobacter junii strain AJ_068]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVQPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=586482 EGT68_RS13675 WP_125272409.1 2871690..2872016(-) (hns) [Acinetobacter junii strain AJ_068]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTCAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAGCCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

89.815

100

0.898