Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TL13_RS09170 Genome accession   NC_021213
Coordinates   1860073..1861440 (-) Length   455 a.a.
NCBI ID   WP_024414079.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855073..1866440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS09145 (TL13_1830) - 1855828..1857108 (-) 1281 WP_015647481.1 MFS transporter -
  TL13_RS09150 (TL13_1831) - 1857200..1857859 (-) 660 WP_015647482.1 LiaF transmembrane domain-containing protein -
  TL13_RS09155 (TL13_1832) - 1857864..1858310 (-) 447 WP_015647483.1 LytTR family DNA-binding domain-containing protein -
  TL13_RS09160 (TL13_1833) - 1858489..1859247 (-) 759 WP_002939965.1 TIGR00266 family protein -
  TL13_RS09165 (TL13_1834) - 1859455..1859949 (-) 495 WP_015647484.1 beta-class carbonic anhydrase -
  TL13_RS09170 (TL13_1835) radA 1860073..1861440 (-) 1368 WP_024414079.1 DNA repair protein RadA Machinery gene
  TL13_RS09175 (TL13_1836) - 1861447..1861978 (-) 532 Protein_1778 histidine phosphatase family protein -
  TL13_RS09180 (TL13_1837) - 1861985..1862428 (-) 444 WP_015647487.1 dUTP diphosphatase -
  TL13_RS09185 (TL13_1838) - 1862658..1863017 (-) 360 WP_024404939.1 YbaN family protein -
  TL13_RS09190 (TL13_1839) - 1863144..1863746 (+) 603 WP_015647489.1 NADPH-dependent FMN reductase -
  TL13_RS09195 (TL13_1840) - 1863761..1864996 (+) 1236 WP_015647490.1 NAD(P)H-dependent oxidoreductase -
  TL13_RS09200 (TL13_1841) - 1865077..1865871 (+) 795 WP_015647491.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49899.43 Da        Isoelectric Point: 6.1911

>NTDB_id=58648 TL13_RS09170 WP_024414079.1 1860073..1861440(-) (radA) [Streptococcus suis TL13]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESVQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=58648 TL13_RS09170 WP_024414079.1 1860073..1861440(-) (radA) [Streptococcus suis TL13]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCTTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGACCTATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACTAAGACCAATATGGAAGAGTTCAAC
CGCGTCCTTGGTGGTGGCGTGGTGCCGGGCAGCCTAGTTCTAATTGGAGGCGATCCAGGGATTGGGAAGTCCACCCTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGTCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGTGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGATTCGATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGACGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.56

0.626

Multiple sequence alignment