Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EGT68_RS13180 Genome accession   NZ_CP078042
Coordinates   2757578..2759803 (+) Length   741 a.a.
NCBI ID   WP_164546258.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752578..2764803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13155 (EGT68_013155) - 2752652..2753491 (+) 840 WP_125272066.1 CBS domain-containing protein -
  EGT68_RS13160 (EGT68_013160) lnt 2753488..2755047 (+) 1560 WP_125272065.1 apolipoprotein N-acyltransferase -
  EGT68_RS13165 (EGT68_013165) - 2755103..2755447 (-) 345 WP_005403600.1 hypothetical protein -
  EGT68_RS13170 (EGT68_013170) gspG 2755711..2756148 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  EGT68_RS13175 (EGT68_013175) gspF 2756172..2757377 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  EGT68_RS13180 (EGT68_013180) priA 2757578..2759803 (+) 2226 WP_164546258.1 primosomal protein N' Machinery gene
  EGT68_RS13185 (EGT68_013185) - 2759838..2761658 (+) 1821 WP_125272063.1 cation:proton antiporter -
  EGT68_RS13190 (EGT68_013190) - 2761778..2762653 (+) 876 WP_004958672.1 Hsp33 family molecular chaperone HslO -
  EGT68_RS13195 (EGT68_013195) - 2762907..2763872 (+) 966 WP_005403596.1 DnaJ C-terminal domain-containing protein -
  EGT68_RS13200 (EGT68_013200) - 2763884..2764210 (+) 327 WP_004763725.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84068.88 Da        Isoelectric Point: 8.5074

>NTDB_id=586478 EGT68_RS13180 WP_164546258.1 2757578..2759803(+) (priA) [Acinetobacter junii strain AJ_068]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILAHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLVECQLEAHDFTPMPVQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYYLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQSLRAIAANIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=586478 EGT68_RS13180 WP_164546258.1 2757578..2759803(+) (priA) [Acinetobacter junii strain AJ_068]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAACCTGATCG
GTATCATTACTGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAGTTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTTTTAAGACAGGGTCGTGCCTTAGATATTTTATTTCACCACTGGAATATTCTTGCGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAGGCATTGGAAAAAAAAGGACTGGTTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTGTACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATCCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGCGGTAAAACC
GAAGTCTATTTGCAAGTCATGCATGAGGTTCTAAAGCAAGGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCACGTTTTCATTGCGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATTTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCTGCTACACCAAGTATTGATAGTTATT
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTTCTAAACCGTCGAGGTTACGCTCCTGTTTTACTGTGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAAACCTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTAATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATCGACTCAGGATTATTAAGCGTAGACCCAAGAGCACCTGAGCGCACAGCACAATT
AATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTATATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCTGTTGCAAAACAAATGCTGAGTGAGCGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTACAGTCAACAGTTTTTGATGGAAGCAGC
ACAAAGCTTAAGAGCTATTGCAGCAAATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.326

99.73

0.811