Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   EGT68_RS12630 Genome accession   NZ_CP078042
Coordinates   2656380..2657267 (-) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651380..2662267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS12610 (EGT68_012610) - 2651749..2652822 (+) 1074 WP_004916462.1 PhoH family protein -
  EGT68_RS12615 (EGT68_012615) ybeY 2653114..2653599 (+) 486 WP_004916463.1 rRNA maturation RNase YbeY -
  EGT68_RS12620 (EGT68_012620) - 2653611..2653910 (+) 300 WP_004916464.1 hypothetical protein -
  EGT68_RS12625 (EGT68_012625) - 2653975..2656125 (-) 2151 WP_125272293.1 TonB-dependent siderophore receptor -
  EGT68_RS12630 (EGT68_012630) tonB2 2656380..2657267 (-) 888 WP_004957789.1 TonB family protein Machinery gene
  EGT68_RS12635 (EGT68_012635) - 2657512..2658189 (+) 678 WP_125272292.1 hypothetical protein -
  EGT68_RS12640 (EGT68_012640) - 2658383..2659099 (+) 717 WP_004916473.1 DUF3108 domain-containing protein -
  EGT68_RS12645 (EGT68_012645) - 2659188..2659763 (+) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  EGT68_RS12650 (EGT68_012650) thyA 2659922..2660764 (+) 843 WP_004916477.1 thymidylate synthase -
  EGT68_RS12655 (EGT68_012655) - 2660785..2661294 (+) 510 WP_004916485.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=586477 EGT68_RS12630 WP_004957789.1 2656380..2657267(-) (tonB2) [Acinetobacter junii strain AJ_068]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=586477 EGT68_RS12630 WP_004957789.1 2656380..2657267(-) (tonB2) [Acinetobacter junii strain AJ_068]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCAATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCTGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAGGCTGATGCGACTACAGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGAGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAGCGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATTTAGATAAATTCCGCCAAAAAGTTGAGCTCTACGGAAATCGCTATTATCCAGATGCTG
CTAAACAACAGCGGTTATCGGGCGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGGCATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGTGCTCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGTACTTGGCGTTTTGATCCAGTGGATGCTGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769