Detailed information NTG0058643

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECTOK1_RS14705
• Genome accession: NZ_AP018395
• Coordinates: 2957748..2958740 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TOK-001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2952748..2963740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECTOK1_RS14685 (ECTOK1_C27960)	otnK	2953523..2954785 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ECTOK1_RS14690 (ECTOK1_C27970)	ygbL	2954782..2955420 (+)	639	WP_001278994.1	aldolase	-
ECTOK1_RS14695 (ECTOK1_C27980)	ygbM	2955425..2956201 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ECTOK1_RS14700 (ECTOK1_C27990)	ygbN	2956290..2957654 (+)	1365	WP_338816399.1	GntP family transporter	-
ECTOK1_RS14705 (ECTOK1_C28000)	rpoS	2957748..2958740 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECTOK1_RS14710 (ECTOK1_C28010)	nlpD	2958803..2959897 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECTOK1_RS14715 (ECTOK1_C28020)	pcm	2960082..2960708 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECTOK1_RS14720 (ECTOK1_C28030)	surE	2960702..2961463 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECTOK1_RS14725 (ECTOK1_C28040)	truD	2961444..2962493 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ECTOK1_RS14730 (ECTOK1_C28050)	ispF	2962490..2962969 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECTOK1_RS14735 (ECTOK1_C28060)	ispD	2962969..2963679 (-)	711	WP_139558403.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=58643 ECTOK1_RS14705 WP_000081550.1 2957748..2958740(-) (rpoS) [Escherichia coli strain TOK-001]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=58643 ECTOK1_RS14705 WP_000081550.1 2957748..2958740(-) (rpoS) [Escherichia coli strain TOK-001]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACTACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715