Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   TL13_RS08265 Genome accession   NC_021213
Coordinates   1665220..1667010 (-) Length   596 a.a.
NCBI ID   WP_041179406.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660220..1672010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS08245 (TL13_1651) - 1661027..1661929 (-) 903 WP_002942329.1 ABC transporter permease -
  TL13_RS08250 (TL13_1652) opp4B 1661943..1662899 (-) 957 WP_015647351.1 oligopeptide ABC transporter permease -
  TL13_RS08255 (TL13_1653) - 1662901..1663842 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  TL13_RS08260 (TL13_1654) - 1663845..1664843 (-) 999 WP_014638617.1 ABC transporter ATP-binding protein -
  TL13_RS08265 (TL13_1655) oppA 1665220..1667010 (-) 1791 WP_041179406.1 oligopeptide ABC transporter substrate-binding protein Regulator
  TL13_RS08270 (TL13_1657) pbp3 1667223..1668464 (+) 1242 WP_015647353.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  TL13_RS08275 (TL13_1658) sufB 1668599..1670014 (-) 1416 WP_015647354.1 Fe-S cluster assembly protein SufB -
  TL13_RS08280 (TL13_1659) sufU 1670409..1670849 (-) 441 WP_015647355.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65647.63 Da        Isoelectric Point: 4.5719

>NTDB_id=58643 TL13_RS08265 WP_041179406.1 1665220..1667010(-) (oppA) [Streptococcus suis TL13]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKKASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=58643 TL13_RS08265 WP_041179406.1 1665220..1667010(-) (oppA) [Streptococcus suis TL13]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACGACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGATTCAACA
TTTGGTGGTATGGTTGACATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGACGACTCAGGTCTTGCTAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGCATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGCCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATTACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGACATGC
CAGTAGATCAGTTGGATTCATATAAAAAAGCATCTAACTTGAATATTGTTGGTTCTTTGGACTCGGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAAGCAGCCGGTAAGAACGTTATGGACGAAAATGCCAAGATGAATGATGTGAAGCT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCCCGTAAACGTACTGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.477

100

0.965

Multiple sequence alignment