Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EGK58_RS13840 Genome accession   NZ_CP078027
Coordinates   2902622..2904844 (+) Length   740 a.a.
NCBI ID   WP_125278817.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2897622..2909844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS13820 (EGK58_013820) lnt 2898371..2899930 (+) 1560 WP_125278820.1 apolipoprotein N-acyltransferase -
  EGK58_RS13825 (EGK58_013825) - 2900079..2900414 (-) 336 WP_125278819.1 hypothetical protein -
  EGK58_RS13830 (EGK58_013830) gspG 2900699..2901082 (-) 384 WP_240904185.1 type II secretion system major pseudopilin GspG -
  EGK58_RS13835 (EGK58_013835) gspF 2901267..2902472 (-) 1206 WP_125278818.1 type II secretion system inner membrane protein GspF -
  EGK58_RS13840 (EGK58_013840) priA 2902622..2904844 (+) 2223 WP_125278817.1 primosomal protein N' Machinery gene
  EGK58_RS13845 (EGK58_013845) - 2904918..2906774 (+) 1857 WP_125278816.1 cation:proton antiporter -
  EGK58_RS13850 (EGK58_013850) hslO 2906825..2907700 (+) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  EGK58_RS13855 (EGK58_013855) - 2907917..2908366 (+) 450 WP_125278815.1 DUF2147 domain-containing protein -
  EGK58_RS13860 (EGK58_013860) - 2908645..2909106 (+) 462 WP_125278814.1 DUF2147 domain-containing protein -
  EGK58_RS13865 (EGK58_013865) - 2909298..2909759 (+) 462 WP_125278813.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83766.67 Da        Isoelectric Point: 8.5518

>NTDB_id=586429 EGK58_RS13840 WP_125278817.1 2902622..2904844(+) (priA) [Acinetobacter variabilis strain AV_175]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANAEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=586429 EGK58_RS13840 WP_125278817.1 2902622..2904844(+) (priA) [Acinetobacter variabilis strain AV_175]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCCATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAGGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCATTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAAGTTCGCCGTTCCGAGAGGCAACAGGAAGCTTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGGATAGAAACAGCGACTTTAAAAGCACTCGAAAAAAAAGGGATTTGCGAATG
TGTACTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATGCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGTAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGTGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTCAAACAGGGCAAGCAGGTGCTGGTACTGGTGCCTGAAATCGGACTGAC
ACCACAAACCATTAGCCGCTTTCAATCCCGCTTCCATTGTCACATCGCCCTGCTGCATTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTGCTTGGCACCCGTTCTGCGATTTATACACCAATG
CCGAATCTGGGCTTGATCATTCTGGATGAAGAGCATGATCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTCCTCTTGGGTTCGGCCACCCCCAGCATTGACAGCTATG
CGCTGGTGCAGCAAGGCAAAATGCAGGTGCTGGAACTGAATCAACGCGCGGGTACAGCACTAATGCCAAAAATCCATATT
CTAGATTTAAAAGTGGCACCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAACGCCTGGCTAAAAA
AGAACAGGTGCTCATTTTTCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGTTGGCAAGCACAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAGCATCTGCATTGTCATCATTGCGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGCTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGCGACTCGACCAGTCGGGTTGGCAGCTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTACGATTCTGCTCGGCACGCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACACTGGTTGCAATTTTGGATATCGATTCCGGTCTGCTCAGTGTCGATTTCCGGGCCACAGAGCGTACAGCACAATT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGAGAACATAAAGGGGATGTATATTTACAGACCTTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGCGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCCCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCCATTCCTGCCCCGATGGAACGCAAAGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAGGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.605

100

0.727