Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   TL13_RS08200 Genome accession   NC_021213
Coordinates   1653575..1654309 (-) Length   244 a.a.
NCBI ID   WP_015647345.1    Uniprot ID   A0A116LFJ4
Organism   Streptococcus suis TL13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648575..1659309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS08170 (TL13_1636) rnpM 1648763..1649059 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  TL13_RS08175 (TL13_1637) nusA 1649076..1650218 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  TL13_RS08180 (TL13_1638) rimP 1650291..1650761 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  TL13_RS08185 (TL13_1639) trmB 1651059..1651697 (-) 639 WP_015647343.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  TL13_RS08190 (TL13_1640) ccrZ 1651694..1652488 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  TL13_RS08195 (TL13_1641) - 1652538..1653578 (-) 1041 WP_015647344.1 ABC transporter permease -
  TL13_RS08200 (TL13_1642) pptA 1653575..1654309 (-) 735 WP_015647345.1 ABC transporter ATP-binding protein Regulator
  TL13_RS08205 (TL13_1643) - 1654372..1654785 (+) 414 WP_015647346.1 HIT family protein -
  TL13_RS08210 (TL13_1644) - 1654787..1655089 (+) 303 WP_015647347.1 hypothetical protein -
  TL13_RS08215 (TL13_1645) - 1655199..1656392 (-) 1194 WP_015647348.1 LCP family protein -
  TL13_RS08220 (TL13_1646) - 1656389..1656916 (-) 528 WP_015647349.1 GNAT family N-acetyltransferase -
  TL13_RS08225 (TL13_1647) tsaE 1656909..1657349 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  TL13_RS08230 (TL13_1648) - 1657450..1659114 (-) 1665 WP_015647350.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26862.13 Da        Isoelectric Point: 4.3606

>NTDB_id=58642 TL13_RS08200 WP_015647345.1 1653575..1654309(-) (pptA) [Streptococcus suis TL13]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSTFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=58642 TL13_RS08200 WP_015647345.1 1653575..1654309(-) (pptA) [Streptococcus suis TL13]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACAACTATTAAGGAAATTATCGGTCTTTTGACGCCCT
ATCAAGGGCAGATTGCAATTGACGGCCTAACTTTGCTGCAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCCGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCACATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116LFJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

97.951

0.742
  pptA Streptococcus thermophilus LMD-9

74.059

97.951

0.725

Multiple sequence alignment