Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   EGK58_RS03970 Genome accession   NZ_CP078027
Coordinates   847289..851806 (+) Length   1505 a.a.
NCBI ID   WP_125278261.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 842289..856806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS03945 (EGK58_003945) - 842758..843402 (-) 645 WP_034170199.1 hypothetical protein -
  EGK58_RS03950 (EGK58_003950) pilG 843685..844068 (+) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  EGK58_RS03955 (EGK58_003955) - 844094..844462 (+) 369 WP_004784985.1 response regulator -
  EGK58_RS03960 (EGK58_003960) - 844468..845004 (+) 537 WP_004784984.1 chemotaxis protein CheW -
  EGK58_RS03965 (EGK58_003965) - 845051..847120 (+) 2070 WP_125278262.1 methyl-accepting chemotaxis protein -
  EGK58_RS03970 (EGK58_003970) chpA 847289..851806 (+) 4518 WP_125278261.1 Hpt domain-containing protein Regulator
  EGK58_RS03975 (EGK58_003975) - 851807..852265 (+) 459 WP_125278260.1 hypothetical protein -
  EGK58_RS03980 (EGK58_003980) dapE 852323..853459 (-) 1137 WP_125278259.1 succinyl-diaminopimelate desuccinylase -
  EGK58_RS03985 (EGK58_003985) - 853583..853732 (-) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  EGK58_RS03990 (EGK58_003990) - 853848..854723 (-) 876 WP_125278258.1 DUF1853 family protein -
  EGK58_RS03995 (EGK58_003995) - 854812..855249 (+) 438 WP_125278257.1 YbaN family protein -
  EGK58_RS04000 (EGK58_004000) elsL 855246..855758 (+) 513 WP_125278256.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1505 a.a.        Molecular weight: 168582.36 Da        Isoelectric Point: 4.2759

>NTDB_id=586413 EGK58_RS03970 WP_125278261.1 847289..851806(+) (chpA) [Acinetobacter variabilis strain AV_175]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDPAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFTLYPKFKQVQELDVDLRPVVLLGQQLQQQMTPEPALEELLQL
ADSLTAEGQITGLELGDSAEDQDIIAAIEISTTEFELEKAETEDAARSDVEETVAIFIEEAEEHLETIAKFLRSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
NFERVWNDYGFAATEAETVETQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLEIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGQAVAAPVEASIPVVEFEYAGATTESEETADEAPEEIASKDTSSDLEPTLNLEDKQVELTETETLTEPVEVVAE
ERSEEDELKSIVEETFLEESEEILDNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIENEQVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAVFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWVDAGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSDNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIVQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVGDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVAHSLPVLLIKGNSGQAIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGDGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGNARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=586413 EGK58_RS03970 WP_125278261.1 847289..851806(+) (chpA) [Acinetobacter variabilis strain AV_175]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATCCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTCGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAACCGGGTACTTTCAGGTTCAATCCAGTTAACGCCTACGATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTACTTTATATCCAAAATTCAAACAGGTGCAGGAACTCGATGTTGACC
TGCGTCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATGACACCTGAACCGGCTTTAGAAGAACTCTTGCAACTG
GCAGACAGTCTGACTGCCGAAGGCCAGATCACTGGTCTTGAGTTAGGTGATTCGGCTGAAGATCAAGATATAATTGCAGC
AATAGAAATAAGCACAACAGAATTTGAGCTTGAAAAAGCCGAAACTGAAGATGCTGCACGCAGTGATGTAGAAGAAACCG
TAGCAATCTTTATCGAGGAAGCCGAAGAGCATCTCGAAACGATTGCCAAGTTCCTGCGTAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
TAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCATCCACTTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTGTTACGTCAGGGTGATAGCAGCAAACTGGCAGCAGTGTATGCG
AATTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAGCGGAAACAGTTGAAACCCAAGGTCTGGTAACCAA
GCTGGTTGAACTGGAGATTGACCTGTTACTGGATGCCGAGTTTGAATTCGATAAACGCGCTAAAGTCGATTATCCAGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCCTATGATGCCTTACTAGAAAAACCGGTACTGCTGAACAGCGATTATGCCTATGAGCTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTTTAAATGATGATACGC
AAAAAACCTTGAGTGAACTTGCTGCATTCGTACAGCAGGATCTGGAAATCTTTGCCGAAGACAATGTCCCTGCTGAGCAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTTGCTGCTTTAAGTCAGCGTATTGCCTC
TGACCGCCAGTACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTTAACAATCTG
ATGCGTCATTTGCACACCTTGAAGGGCGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATTTCGCACGAACTGGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATTGCAGTAACGCCTGCTTTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCAGCGGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTGGCTGGTCAAGCTGTTGCGGCTCCGGTAGAAGCATCAATTCCTGTTGTCGAGTTTGAATATGCAGG
AGCTACTACTGAATCTGAAGAGACAGCAGATGAAGCACCGGAAGAGATTGCATCAAAAGACACAAGTTCAGATCTAGAAC
CAACTCTAAACTTAGAAGATAAACAAGTTGAGCTTACTGAAACAGAAACTTTGACTGAGCCCGTTGAGGTTGTAGCAGAA
GAACGTTCTGAAGAAGATGAACTGAAGTCGATTGTTGAAGAAACCTTCCTGGAAGAATCAGAAGAGATTCTCGACAATAC
CGAAAAACTGCTGAACCAATGGTTTGATCAACGTAGTGATCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGATTGAAAACGAACAGGTGGCCAGCATTGCGTATGAACTGGAAACCACATTCGAACAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCTGTCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGTCTGAAAAAGATTGCTTATGTGGATGTTACTGCGCAGCTGCCGG
AACGTCTGGCTAAAACAGAAACGCTGGTCACTGAAAATAGCTTCGAATTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAATGGGTTGATGCCGGTAATACCGATACCAGCCACGAGATGATCCGTATTTCTGCTGACCTGGTTGAGAA
GATGATCGACCTGTCAGGCGAGAATGCAATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAGATGGAACTGGCAATCAAGCGTCTGGCGGATCAGTTGCGCCGAATGGAAGGCGAGCTGGAATCTCAAATTATTGCC
AAACACGGTTCAGACAACTCGCGTTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCACTGAACCAGTTGTC
CAAGTCGCTTGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACTCTATCTGACAAGATTCGTGAAACTGAAGGTT
TGTTATTGCAACAATCACGGATTCAGGCCGAGATTCAGGAAAGTCTAATGCGTACCCGTCTGGTACCGTTTGACCGGATG
TTGCCGCGTTTACAACGTATCGTACGTCAGACGTCTACGACCTTGAACCGTCCGGCCGAACTGATTGTTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTAGTAACGCCATTCGAACATATGTTGCGTAATGCGATTGACCATGGTC
TGGAAGATACAGCAGACCGTATTGCCTTGAACAAACCAGAAGTCGGTTCAATCCTGTTGAATATCAGTCGTCAAGGTACA
GATGTTATCGTCTCATTTAGTGATGATGGTAAAGGTATCGATGCTGAGAAGATTCGTGAGAAAGCACTGAGCCAAGGCCT
GATCAAAGAAGATCAGACCCTGGATTCGGAAGAGTTATTGCAATTCATTTTCCACCCGGGCTTCAGTACCGCTAAATCTG
TAACCCAGATTTCAGGTCGTGGTGTCGGACTGGATGTAGTACAAAGCGAGATCAAGTCGCTGGGCGGTCACGTATCTGTC
AGCTCTGAAGTAGGCAAAGGTACAACTTTCACCATTCGCGTACCGACGACTGTAGCAGTCAGTGATGCCTTGATGGTAAA
AGTGGGCGATCAGCAATATGCCGTTTCTCTGGCGCAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ACTTCAACAGTAAAGACGATTTCTTCAAGATTGATGGCGTTAATTACAAATTGCGTTACCTGTCTGAGTTCGTATCGAAT
CAGCCAATTCCACGTCTGAATAATGTGGCGCATTCATTGCCAGTATTGCTGATAAAAGGCAACAGTGGTCAAGCCATTGC
CTTGTTAGTCGATCAACTTGTCGGTTCACGTGCACAGATCGTGGTGAAACCAATTGGCCACCAGTTCGCCAATATTGGTG
TAGTGACCGGTGCGACGATTCTTGGTGATGGTCAGGTCTGTCTGATTCTAGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACGCAGCGTGTCAAACACATGCAGGATCAACGTGATGGTTCACGTTCTGGCAATGCTCGCCGTCTGGTAATGATCGT
GGATGACTCGGTGACTGTTCGTAAGGTGACCTCGCGTCTGCTTGAGCGTCAGGGCTATGATATTGTCACCGCCAAAGATG
GTGTGGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGT
TTCGAGGTCACGAACCTGGTCCGTCACCACGATATTCACCGCGACTTGCCAATTATCATGATTACTTCACGTACGGGTGA
AAAACACCGTGAACGTGCTTTCAGTCTGGGCGTAACCCACTACATGGGTAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ATATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.302

100

0.611