Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   EGK58_RS02705 Genome accession   NZ_CP078027
Coordinates   580547..581404 (+) Length   285 a.a.
NCBI ID   WP_171065445.1    Uniprot ID   A0A8F6M5R8
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575547..586404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS02680 (EGK58_002680) wrbA 576583..577179 (+) 597 WP_125279715.1 NAD(P)H:quinone oxidoreductase -
  EGK58_RS02685 (EGK58_002685) - 577230..577664 (-) 435 WP_171431289.1 hypothetical protein -
  EGK58_RS02690 (EGK58_002690) - 578065..578640 (-) 576 WP_005233791.1 xanthine phosphoribosyltransferase -
  EGK58_RS02695 (EGK58_002695) - 578731..579390 (-) 660 WP_373686180.1 DUF3108 domain-containing protein -
  EGK58_RS02700 (EGK58_002700) - 579598..580284 (-) 687 WP_125279716.1 hypothetical protein -
  EGK58_RS02705 (EGK58_002705) tonB2 580547..581404 (+) 858 WP_171065445.1 energy transducer TonB Machinery gene
  EGK58_RS02710 (EGK58_002710) - 581401..581802 (-) 402 WP_125279717.1 hypothetical protein -
  EGK58_RS02715 (EGK58_002715) - 581959..582258 (-) 300 WP_125279719.1 antibiotic biosynthesis monooxygenase family protein -
  EGK58_RS02720 (EGK58_002720) - 582352..583503 (-) 1152 WP_058951619.1 IS4-like element ISAbe18 family transposase -
  EGK58_RS02725 (EGK58_002725) ybeY 583628..584110 (-) 483 WP_125279682.1 rRNA maturation RNase YbeY -
  EGK58_RS02730 (EGK58_002730) - 584145..585221 (-) 1077 WP_004786823.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32744.16 Da        Isoelectric Point: 6.1603

>NTDB_id=586410 EGK58_RS02705 WP_171065445.1 580547..581404(+) (tonB2) [Acinetobacter variabilis strain AV_175]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHSLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=586410 EGK58_RS02705 WP_171065445.1 580547..581404(+) (tonB2) [Acinetobacter variabilis strain AV_175]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCACGTGATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACTAAAGAGATTGCAGTCAGTATTCGTCAAACCGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACTGGAGAAGAACAGCAAGAAAGTCCGGATATGTTGCAACAACAGCG
CGAATTAAGCTTTGAAGAAAAAGTGCTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTCCAGGCCAAAGCCGCGATGGTAGCCAGTCTGGAAGCCCAATATTTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTCTCTGCGGCTTATCTGGA
AAAATTCCGTCAAAAAGTAGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGTTTGATGGTGATCTTAAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAGTTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGTAAGGCAGCACCATTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGTT
ACGAATTATTCGAACCTGGCGCTTTGATCCGGCTGAAGCAGAATTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

97.895

0.723