Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EGK58_RS01550 Genome accession   NZ_CP078027
Coordinates   357839..359404 (-) Length   521 a.a.
NCBI ID   WP_125279872.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 352839..364404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01530 (EGK58_001530) - 354121..355293 (+) 1173 WP_125279630.1 S41 family peptidase -
  EGK58_RS01535 (EGK58_001535) - 355294..355446 (-) 153 Protein_300 helix-turn-helix domain-containing protein -
  EGK58_RS01540 (EGK58_001540) - 355465..356493 (-) 1029 WP_080633168.1 IS701 family transposase -
  EGK58_RS17065 (EGK58_001545) - 356658..357821 (-) 1164 Protein_302 sigma-54-dependent transcriptional regulator -
  EGK58_RS01550 (EGK58_001550) pilS 357839..359404 (-) 1566 WP_125279872.1 sensor histidine kinase Regulator
  EGK58_RS01555 (EGK58_001555) - 359432..360067 (-) 636 WP_005233474.1 response regulator transcription factor GacA -
  EGK58_RS01560 (EGK58_001560) - 360284..361336 (+) 1053 WP_125279873.1 serine hydrolase -
  EGK58_RS01565 (EGK58_001565) - 361391..362695 (-) 1305 WP_004784488.1 IS4 family transposase -
  EGK58_RS01570 (EGK58_001570) thrC 362801..363940 (-) 1140 WP_004787275.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59727.83 Da        Isoelectric Point: 6.3704

>NTDB_id=586400 EGK58_RS01550 WP_125279872.1 357839..359404(-) (pilS) [Acinetobacter variabilis strain AV_175]
MAQTSSYSELNQYHLGLWYSAYRLIITTGLLLIFLLTYPDMTTDYQYPKLYHYALMIGVAVNTVQLFTLRWVKRLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIITLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFIPLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSPHIQLNIHPYEHKVWIDVRDFGSGIATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=586400 EGK58_RS01550 WP_125279872.1 357839..359404(-) (pilS) [Acinetobacter variabilis strain AV_175]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCCTACCGCCTGATTATCAC
CACGGGTCTGTTGCTGATTTTCCTGCTGACTTATCCCGATATGACCACGGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTGGCGTCGCCGTCAATACTGTGCAGCTGTTTACACTAAGATGGGTAAAGCGCCTAATTCAGCCACAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGTCCAAATGTCCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCCTCATTATTACTCGATGCCAAGAAAGCCCTGATCATCACCCTGATTGCGGTGA
TTAGTATCATCTACCAGCATTTTATCGGCAGTATTTTTGCCTTTTCCTCGCTTACCAATATCGGGAATAGTGCCCTGCTG
GCCTTTCTATTTTTTGTCGTCTATGGCTCGGGACAAATTGCGGTACGGCGCTTTCAGATTCTGGAAAACCTGAATTTTTC
TCAATCGCTGGAACTATATCGCTTACAGAATATTAACCGCTATATTTTGGAACAGATTGAAACCGGCTATCTGGTCTTAG
ATGAGAATTACCATGTAGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGA
TTTTCGTTATACCAATCTCAAAATGACTTGTTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAGCAGAGTCGTTATAATATTCATGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACTCTCCTCG
TGCTGCAAGATGCGCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTTTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAACGATCTTTATCTCGATTCTGAACCTGAACAGCAGCA
GGTCCTGCATCAGATGATCAGCCGACAGGCTACCCGTATTGACCGGATTATCCAAGACACCCTGAATATGGTGAAGAATA
AAGAAACCCATCCGGTCGTGATTCAGCTGAATGAGTTTATACCACTGTTTATTCAGGAAGATTTAGCAGATGTGGCAGAT
CAGATTCAATTTAATATTGATGTACCACTGGCTATTCAGTTCGATGAAGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCATAATTCACCGGATTCGCCCCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTTCGGGATTTTGGCTCTGGTATTGCCACTCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACACAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGCTGTCAACGTGTAACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.02

96.929

0.562